RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TNNI1P19237 187 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 YWHAQP27348 245 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 GRIA2P42262 883 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 CYP24A1Q07973 514 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 ALCAMQ13740 583 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 MAPRE1Q15691 268 aaKnown RBP13.68□□□□□ -0.22
LINC00339-202ENST00000416769 EOGTQ5NDL2 527 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 C10orf76Q5T2E6 689 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 TDRD10Q5VZ19 366 aaKnown RBP13.68□□□□□ -0.22
LINC00339-202ENST00000416769 TOGARAM2Q6ZUX3 1019 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 FAM35AQ86V20 835 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 ZNF513Q8N8E2 541 aaPredicted RBP13.68□□□□□ -0.22
LINC00339-202ENST00000416769 B3GALNT2Q8NCR0 500 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 ZMIZ2Q8NF64 920 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 SPACA7Q96KW9 195 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 CGRRF1Q99675 332 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 CLSTN2Q9H4D0 955 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 CD248Q9HCU0 757 aa13.68□□□□□ -0.22
LINC00339-202ENST00000416769 APC2O95996 2303 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 PVALEFA0A1B0GWK0 134 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 TBC1D3BA6NDS4 549 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 MDM4O15151 490 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 GREM1O60565 184 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 CCDC130P13994 396 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 PFKLP17858 780 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 PDE6CP51160 858 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 SLC5A3P53794 718 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 ASIC1P78348 528 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 RPL6Q02878 288 aaKnown RBP13.67□□□□□ -0.22
LINC00339-202ENST00000416769 RING1Q06587 406 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 DPYDQ12882 1025 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 SEMA3BQ13214 749 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 PSMD6Q15008 389 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 ANO4Q32M45 955 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 SLC23A3Q6PIS1 610 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 GPRIN1Q7Z2K8 1008 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 C11orf74Q86VG3 221 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 CCDC65Q8IXS2 484 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 CHCHD4Q8N4Q1 142 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 SCFD1Q8WVM8 642 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 SLITRK1Q96PX8 696 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 NUSAP1Q9BXS6 441 aaKnown RBP13.67□□□□□ -0.22
LINC00339-202ENST00000416769 ELOVL4Q9GZR5 314 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 BLZF1Q9H2G9 400 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 CAPN10Q9HC96 672 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 POLMQ9NP87 494 aaPredicted RBP13.67□□□□□ -0.22
LINC00339-202ENST00000416769 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.67□□□□□ -0.22
LINC00339-202ENST00000416769 OSER1Q9NX31 292 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 CYP8B1Q9UNU6 501 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 R3HCC1Q9Y3T6 440 aaKnown RBP13.67□□□□□ -0.22
LINC00339-202ENST00000416769 CELSR3Q9NYQ7 3312 aa13.67□□□□□ -0.22
LINC00339-202ENST00000416769 ANKRD11Q6UB99 2663 aaPredicted RBP13.67□□□□□ -0.22
LINC00339-202ENST00000416769 IGHV1OR15-9A0A0B4J2B8 117 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 E2F8A0AVK6 867 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 PRRT4C9JH25 899 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 SLC9A3R1O14745 358 aaPredicted RBP13.66□□□□□ -0.22
LINC00339-202ENST00000416769 HOXC11O43248 304 aaPredicted RBP13.66□□□□□ -0.22
LINC00339-202ENST00000416769 HOXB2P14652 356 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 NDUFV2P19404 249 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 EIF2DP41214 584 aaKnown RBP13.66□□□□□ -0.22
LINC00339-202ENST00000416769 TNNC1P63316 161 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 LMAN2Q12907 356 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 CUL4BQ13620 913 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 PEAR1Q5VY43 1037 aaPredicted RBP13.66□□□□□ -0.22
LINC00339-202ENST00000416769 GRAMD1CQ8IYS0 662 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 FUKQ8N0W3 1084 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 NUP93Q8N1F7 819 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 MINDY1Q8N5J2 469 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 TERB1Q8NA31 727 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 BHMTQ93088 406 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 SYAP1Q96A49 352 aaPredicted RBP13.66□□□□□ -0.22
LINC00339-202ENST00000416769 SMOQ99835 787 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 NUP62CLQ9H1M0 184 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 KRT82Q9NSB4 513 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 NUDT5Q9UKK9 219 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 PLXNB3Q9ULL4 1909 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 NUMA1Q14980 2115 aa13.66□□□□□ -0.22
LINC00339-202ENST00000416769 WASH3PC4AMC7 463 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 SMC2O95347 1197 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 VNN1O95497 513 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 ZDHHC11BP0C7U3 371 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 PRR29P0C7W0 189 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 CD59P13987 128 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 MAOBP27338 520 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 TNFRSF4P43489 277 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 GAD2Q05329 585 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 ZNF33AQ06730 810 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 PNOCQ13519 176 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 SURF1Q15526 300 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 CAMK4Q16566 473 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 FAM26FQ5R3K3 315 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 HECTD3Q5T447 861 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 TPGS1Q6ZTW0 290 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 UNC13DQ70J99 1090 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 ACOT1Q86TX2 421 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 CCDC26Q8TAB7 109 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 SPATA20Q8TB22 786 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 ZNF507Q8TCN5 953 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 JAKMIP2Q96AA8 810 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 CEP295NLQ96MC4 621 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms