RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DEFB106AQ8N104 65 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 SLC35F6Q8N357 371 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 STKLD1Q8NE28 680 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.91□□□□□ -0.02
SF3B1-204ENST00000414963 C16orf45Q96MC5 204 aaPredicted RBP14.91□□□□□ -0.02
SF3B1-204ENST00000414963 WDR24Q96S15 920 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 NPY6RQ99463 290 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 LRRC3Q9BY71 257 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 TTYH1Q9H313 450 aaPredicted RBP14.91□□□□□ -0.02
SF3B1-204ENST00000414963 NSUN3Q9H649 340 aaKnown RBP14.91□□□□□ -0.02
SF3B1-204ENST00000414963 NMUR1Q9HB89 426 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 TLR8Q9NR97 1041 aaKnown RBP14.91□□□□□ -0.02
SF3B1-204ENST00000414963 GMIPQ9P107 970 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 JRKLQ9Y4A0 524 aa14.91□□□□□ -0.02
SF3B1-204ENST00000414963 A0A1W2PQH9 124 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 PSMA2P25787 234 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 SDC4P31431 198 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 PCK1P35558 622 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 NRIP1P48552 1158 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 EPHA5P54756 1037 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 IFRD2Q12894 506 aaPredicted RBP14.9□□□□□ -0.02
SF3B1-204ENST00000414963 TAF12Q16514 161 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 PABPC1LQ4VXU2 614 aaKnown RBP14.9□□□□□ -0.02
SF3B1-204ENST00000414963 DCAF6Q58WW2 860 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 MEI1Q5TIA1 1274 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 SYPL2Q5VXT5 272 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 BTBD8Q5XKL5 378 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 MSANTD2Q6P1R3 559 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 STRADAQ7RTN6 431 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 ELMOD1Q8N336 334 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 ARFGAP1Q8N6T3 406 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 CMASQ8NFW8 434 aaPredicted RBP14.9□□□□□ -0.02
SF3B1-204ENST00000414963 CD101Q93033 1021 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 PGAP3Q96FM1 320 aaPredicted RBP14.9□□□□□ -0.02
SF3B1-204ENST00000414963 ZNF512Q96ME7 567 aaPredicted RBP14.9□□□□□ -0.02
SF3B1-204ENST00000414963 OSER1Q9NX31 292 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 STAP1Q9ULZ2 295 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 NAALADL1Q9UQQ1 740 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 MYH10P35580 1976 aa14.9□□□□□ -0.02
SF3B1-204ENST00000414963 ZNF840PA6NDX5 716 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 CAPN9O14815 690 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 F11P03951 625 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 NCAM1P13591 858 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 DESP17661 470 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 COMTP21964 271 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 TUBP50607 506 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 EIF4EBP2Q13542 120 aaPredicted RBP14.89□□□□□ -0.03
SF3B1-204ENST00000414963 LRRC38Q5VT99 294 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 PEX26Q7Z412 305 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 TMC8Q8IU68 726 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 EFHBQ8N7U6 833 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 HES6Q96HZ4 224 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 CFAP57Q96MR6 1250 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 CDK5RAP1Q96SZ6 601 aaKnown RBP14.89□□□□□ -0.03
SF3B1-204ENST00000414963 PRKD2Q9BZL6 878 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 GOLPH3Q9H4A6 298 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 IL21Q9HBE4 155 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 DZANK1Q9NVP4 752 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.89□□□□□ -0.03
SF3B1-204ENST00000414963 TRPM5Q9NZQ8 1165 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 AMFRQ9UKV5 643 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 MAGED2Q9UNF1 606 aaPredicted RBP14.89□□□□□ -0.03
SF3B1-204ENST00000414963 LAMA3Q16787 3333 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 PLXNA3P51805 1871 aa14.89□□□□□ -0.03
SF3B1-204ENST00000414963 GREB1Q4ZG55 1949 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 MYO7AQ13402 2215 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 TRIOBPQ9H2D6 2365 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 TMEM110-MUSTN1A8MSY1 372 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 MIF4GDA9UHW6 222 aaKnown RBP14.88□□□□□ -0.03
SF3B1-204ENST00000414963 FANCGO15287 622 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 XYLBO75191 536 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 LRCH4O75427 683 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 RFPL2O75678 378 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 RNF8O76064 485 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 FGF19O95750 216 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 FTCDO95954 541 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 F9P00740 461 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 IGLV3-25P01717 112 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 RALAP11233 206 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 RARGP13631 454 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 TNNT1P13805 278 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 PTPN2P17706 415 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 CTNNA2P26232 953 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 HYAL1Q12794 435 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 GRIN2CQ14957 1233 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 OTUD1Q5VV17 481 aaPredicted RBP14.88□□□□□ -0.03
SF3B1-204ENST00000414963 CC2D1AQ6P1N0 951 aaPredicted RBP14.88□□□□□ -0.03
SF3B1-204ENST00000414963 KLHDC10Q6PID8 442 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 SYT10Q6XYQ8 523 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 TMEM150AQ86TG1 271 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 LEMD2Q8NC56 503 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 VN1R2Q8NFZ6 395 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 EDEM1Q92611 657 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 CASP10Q92851 521 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 TBCBQ99426 244 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 TLR10Q9BXR5 811 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 SMOC2Q9H3U7 446 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 PRDM12Q9H4Q4 367 aa14.88□□□□□ -0.03
SF3B1-204ENST00000414963 ZNF334Q9HCZ1 680 aaPredicted RBP14.88□□□□□ -0.03
SF3B1-204ENST00000414963 OLA1Q9NTK5 396 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms