RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 TCAF1Q9Y4C2 921 aa5□□□□□ -1.61
BRCA1-204ENST00000412061 RAD54BQ9Y620 910 aa5□□□□□ -1.61
BRCA1-204ENST00000412061 AATKQ6ZMQ8 1374 aa5□□□□□ -1.61
BRCA1-204ENST00000412061 KRTAP23-1A1A580 65 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 E7ENX8 843 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ZNF185O15231 689 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ERN1O75460 977 aaKnown RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 KRT38O76015 456 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SGPL1O95470 568 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 GPANK1O95872 356 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 PORP16435 677 aaPredicted RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 EGR1P18146 543 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 HOXC13P31276 330 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 HSD11B2P80365 405 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 TAP2Q03519 686 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SCAPQ12770 1279 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 EIF4A2Q14240 407 aaKnown RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SLC29A2Q14542 456 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 RRP1BQ14684 758 aaKnown RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 INSCQ1MX18 579 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 PDCD4Q53EL6 469 aaKnown RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ATPAF1Q5TC12 328 aaPredicted RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ATG16L1Q676U5 607 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 RAP1GAP2Q684P5 730 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 TAF2Q6P1X5 1199 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 CRTC1Q6UUV9 634 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 LAYNQ6UX15 382 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SLC30A10Q6XR72 485 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 KIAA0408Q6ZU52 694 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 TMTC3Q6ZXV5 915 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 KRT28Q7Z3Y7 464 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 GDF7Q7Z4P5 450 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 GAS2L3Q86XJ1 694 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 GALNT13Q8IUC8 556 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 NDUFAF2Q8N183 169 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ARL10Q8N8L6 244 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 NSUN7Q8NE18 718 aaKnown RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 POC1BQ8TC44 478 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 KCNG4Q8TDN1 519 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 AFAP1L1Q8TED9 768 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ATP2A3Q93084 1043 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ADOQ96SZ5 270 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ZSWIM1Q9BR11 485 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 MESP1Q9BRJ9 268 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SIL1Q9H173 461 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 DEF6Q9H4E7 631 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 PRDM13Q9H4Q3 707 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 CHODLQ9H9P2 273 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 NOD2Q9HC29 1040 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 CD248Q9HCU0 757 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 HEYLQ9NQ87 328 aaPredicted RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 EIF2B3Q9NR50 452 aaKnown RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 TRPM5Q9NZQ8 1165 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 CTTNBP2NLQ9P2B4 639 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ZNF112Q9UJU3 913 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 RPS6KA6Q9UK32 745 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 ZHX1Q9UKY1 873 aaPredicted RBP4.99□□□□□ -1.61
BRCA1-204ENST00000412061 TBX20Q9UMR3 447 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SORCS3Q9UPU3 1222 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 SHOC2Q9UQ13 582 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 CHST2Q9Y4C5 530 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 CYP46A1Q9Y6A2 500 aa4.99□□□□□ -1.61
BRCA1-204ENST00000412061 LOC102723971A0A1B0GUV8 181 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 hCG_1807616A0A1W2PRN6 198 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 DCLK1O15075 740 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CCP110O43303 1012 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 KCNQ3O43525 872 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 RPS6KA4O75676 772 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 SCAF4O95104 1147 aaKnown RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 HSPA4LO95757 839 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CLTBP09497 229 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CSF1P09603 554 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 KCNA2P16389 499 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 BTF3P20290 206 aaKnown RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CHRM3P20309 590 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 ACVR2AP27037 513 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 ABCD3P28288 659 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 GCLCP48506 637 aaPredicted RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CLK1P49759 484 aaKnown RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 SELENOPP49908 381 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 TOB1P50616 345 aaPredicted RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 LOXL3P58215 753 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 IFI35P80217 286 aaPredicted RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 OCA2Q04671 838 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 KRT17Q04695 432 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 BOP1Q14137 746 aaKnown RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 WTAPQ15007 396 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 MGAT5BQ3V5L5 792 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 PLA1AQ53H76 456 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 SNX30Q5VWJ9 437 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 NUGGCQ68CJ6 796 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 ZDHHC24Q6UX98 284 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.98□□□□□ -1.61
BRCA1-204ENST00000412061 KDELC2Q7Z4H8 507 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CLNKQ7Z7G1 428 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 CPLX4Q7Z7G2 160 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 ARMC8Q8IUR7 673 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 MAPKAPK5Q8IW41 473 aa4.98□□□□□ -1.61
BRCA1-204ENST00000412061 SMCR8Q8TEV9 937 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms