RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MROH9Q5TGP6 573 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 SYTL1Q8IYJ3 562 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 TATDN2Q93075 761 aa13.27□□□□□ -0.28
COL6A3-206ENST00000409809 UBDO15205 165 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 CCNCP24863 283 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ANKRD13AQ8IZ07 590 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ABI1Q8IZP0 508 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 AGR3Q8TD06 166 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ZHX1-C8orf76Q96EF9 292 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 UMODL1Q5DID0 1318 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 CPDO75976 1380 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 LOC100653049A0A140TA62 436 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 MAGEA8P43361 318 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 BLMHQ13867 455 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 DGKKQ5KSL6 1271 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 RNF135Q8IUD6 432 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ELMO2Q96JJ3 720 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 PAGR1Q9BTK6 254 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 LEMD3Q9Y2U8 911 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 TELO2Q9Y4R8 837 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 IFNA7P01567 189 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 CHRNDQ07001 517 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 EXD1Q8NHP7 514 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ANKZF1Q9H8Y5 726 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 TRMUO75648 421 aaKnown RBP13.27□□□□□ -0.29
COL6A3-206ENST00000409809 NNMTP40261 264 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 GCLMP48507 274 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 GPC3P51654 580 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 MTA1Q13330 715 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 SLC5A9Q2M3M2 681 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ANKMY2Q8IV38 441 aa13.27□□□□□ -0.29
COL6A3-206ENST00000409809 ZBTB5O15062 677 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 CAMTA2O94983 1202 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 BMP10O95393 424 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF594Q96JF6 807 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 MND1Q9BWT6 205 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 MRPL4Q9BYD3 311 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 THRAP3Q9Y2W1 955 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ALDH1A3P47895 512 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 SEC31BQ9NQW1 1179 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 SLC12A4Q9UP95 1085 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ZDHHC9Q9Y397 364 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 TMEM2Q9UHN6 1383 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 P4HBP07237 508 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 VAV1P15498 845 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 FLT3P36888 993 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 SF3B3Q15393 1217 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 SNRNP48Q6IEG0 339 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 C7orf31Q8N865 590 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 CLEC11AQ9Y240 323 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 PAICSP22234 425 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ARHGDIBP52566 201 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 LRRC24Q50LG9 513 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 PADI6Q6TGC4 694 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 LAYNQ6UX15 382 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 FAM118BQ9BPY3 351 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 TSPAN19P0C672 248 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ERP29P30040 261 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 VBP1P61758 197 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 BOLA3Q53S33 107 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 C9orf72Q96LT7 481 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 BTBD9Q96Q07 612 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 NDFIP2Q9NV92 336 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 CD274Q9NZQ7 290 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 EMSYQ7Z589 1322 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 RPS8P62241 208 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 TNK2Q07912 1038 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 SYDE2Q5VT97 1194 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 TMEM110Q86TL2 294 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 OSBPL6Q9BZF3 934 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 DHX35Q9H5Z1 703 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 POLR1BQ9H9Y6 1135 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ANKHQ9HCJ1 492 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 E9PBE3 544 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 LOC110117498-PIK3R3F6TDL0 507 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 M0QYV0 167 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 KCNQ3O43525 872 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ATP6V1G1O75348 118 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF844Q08AG5 666 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ERICH5Q6P6B1 374 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 PLET1Q6UQ28 207 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF662Q6ZS27 426 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 POC5Q8NA72 575 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 LRRC20Q8TCA0 184 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 DQX1Q8TE96 717 aaKnown RBP13.26□□□□□ -0.29
COL6A3-206ENST00000409809 ACOT12Q8WYK0 555 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 PIK3R3Q92569 461 aa13.26□□□□□ -0.29
COL6A3-206ENST00000409809 MROH7-TTC4A0A0A0MT08 1334 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 TSHRP16473 764 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF507Q8TCN5 953 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 EPS8L3Q8TE67 593 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 SDR42E1Q8WUS8 393 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 PCIF1Q9H4Z3 704 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 RPS6KA6Q9UK32 745 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 PALLDQ8WX93 1383 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CCNKO75909 580 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 LRRC74AQ0VAA2 488 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 HIST2H2ACQ16777 129 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 HIST2H2AA3Q6FI13 130 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms