RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARRB1P49407 418 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 MRPS35P82673 323 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 KLC1Q07866 573 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 LPAL2Q16609 132 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 AHI1Q8N157 1196 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 FBXL18Q96ME1 805 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM175Q9BSA9 504 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 NIF3L1Q9GZT8 377 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ZMYND12Q9H0C1 365 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 KLHL25Q9H0H3 589 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SMYD2Q9NRG4 433 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 OLFML3Q9NRN5 406 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 PEX10O60683 326 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CPP00450 1065 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 HSPA9P38646 679 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ETF1P62495 437 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 UBE3AQ05086 875 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SLC39A14Q15043 492 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 Q4G0T1 1027 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SEZ6Q53EL9 994 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 FAM173BQ6P4H8 233 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ADGRA1Q86SQ6 560 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ZFYVE19Q96K21 471 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 FAM129AQ9BZQ8 928 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 EMC3Q9P0I2 261 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 PVALEFA0A1B0GWK0 134 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 UBA6A0AVT1 1052 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 PSMD12O00232 456 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 RPA1P27694 616 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 HNF1BP35680 557 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 RENBPP51606 427 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 POLR2LP62875 67 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TRIM59Q8IWR1 403 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 GJD3Q8N144 294 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 WDR48Q8TAF3 677 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 C19orf60Q96EN9 201 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 AIFM3Q96NN9 605 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 MCCC1Q96RQ3 725 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM60Q9H2L4 133 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ETAA1Q9NY74 926 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CACNB4O00305 520 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 RASGRP1O95267 797 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CXCL8P10145 99 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 GSPT1P15170 499 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 MAPK8P45983 427 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 RAD23BP54727 409 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 SIM2Q14190 667 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 SNAP47Q5SQN1 464 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 FAM43BQ6ZT52 329 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ACOT1Q86TX2 421 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 C18orf8Q96DM3 657 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 NAF1Q96HR8 494 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ZCCHC2Q9C0B9 1178 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TMEM51Q9NW97 253 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 DDIT4Q9NX09 232 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ZSCAN32Q9NX65 697 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CRLS1Q9UJA2 301 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 H0Y3Z8 333 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 B4GALT4O60513 344 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 F9P00740 461 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ITGAVP06756 1048 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 PSEN1P49768 467 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CASP6P55212 293 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TAP1Q03518 808 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 NAALADL2Q58DX5 795 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ALS2CLQ60I27 953 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KLHL35Q6PF15 583 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TPRG1Q6ZUI0 275 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 PTAR1Q7Z6K3 402 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CFAP97Q9P2B7 532 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KLHL3Q9UH77 587 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 MYO5BQ9ULV0 1848 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 MRC1P22897 1456 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 RHPN2P1A8MT19 583 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KPNA7A9QM74 516 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KRIT1O00522 736 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 DTNBO60941 627 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ITGBL1O95965 494 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 EPHX1P07099 455 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ANXA6P08133 673 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KCNA3P22001 575 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 BMPR1AP36894 532 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF200P98182 395 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 C8orf34Q49A92 452 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 GDF6Q6KF10 455 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CMTR2Q8IYT2 770 aaKnown RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 UBA3Q8TBC4 463 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 SPPL2BQ8TCT7 592 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KCNV2Q8TDN2 545 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 ZBTB10Q96DT7 871 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 USP28Q96RU2 1077 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 TSPAN18Q96SJ8 248 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 C8orf33Q9H7E9 229 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 SAE1Q9UBE0 346 aaPredicted RBP7.55□□□□□ -1.2
SCN9A-202ENST00000409435 KIAA1257Q9ULG3 409 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 NFU1Q9UMS0 254 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 PCDHB3Q9Y5E6 796 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 CCDC151A5D8V7 595 aa7.55□□□□□ -1.2
SCN9A-202ENST00000409435 GOLGA8MH3BSY2 632 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms