RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CDCA2Q69YH5 1023 aaPredicted RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 GPR152Q8TDT2 470 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 ATP6V1E2Q96A05 226 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 PAWRQ96IZ0 340 aaKnown RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 TSPAN18Q96SJ8 248 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 PNKPQ96T60 521 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 TTPALQ9BTX7 342 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 TKTL2Q9H0I9 626 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 ISCUQ9H1K1 167 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 MOSPD1Q9UJG1 213 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 TRIM66O15016 1216 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 BRAFP15056 766 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 MMP8P22894 467 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 PPM1AP35813 382 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 KPNA2P52292 529 aaKnown RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 GHRHRQ02643 423 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 RPS6KA2Q15349 733 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 PPM1LQ5SGD2 360 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 C7orf61Q8IZ16 206 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 FBXO25Q8TCJ0 367 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 CPXM1Q96SM3 734 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 DYRK4Q9NR20 520 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 DPP7Q9UHL4 492 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 ZMYND8Q9ULU4 1186 aaPredicted RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIG4-202ENST00000405925 CDY1Q9Y6F8 540 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 PRRC2BQ5JSZ5 2229 aaKnown RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 TTLL13PA6NNM8 815 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 CYP1A2P05177 515 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 WEE1P30291 646 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 CCT5P48643 541 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 RAD23BP54727 409 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 CCNG2Q16589 344 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 MORN1Q5T089 497 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 AADACL2Q6P093 401 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 OR2W6PQ8NHA6 318 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 APBB2Q92870 758 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 CYTH2Q99418 400 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 CEP41Q9BYV8 373 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 ANGPTL3Q9Y5C1 460 aa9.43□□□□□ -0.9
LIG4-202ENST00000405925 N4BP2Q86UW6 1770 aaPredicted RBP9.43□□□□□ -0.9
LIG4-202ENST00000405925 KCNK1O00180 336 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 VNN1O95497 513 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 PAX3P23760 479 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 PBX3P40426 434 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 DUSP4Q13115 394 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ZC3H12AQ5D1E8 599 aaKnown RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 LCLAT1Q6UWP7 414 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ECHDC2Q86YB7 292 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 CARNMT1Q8N4J0 409 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 PLEKHO2Q8TD55 490 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIG4-202ENST00000405925 HDAC11Q96DB2 347 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 APOL2Q9BQE5 337 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 IGFLR1Q9H665 355 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ADAM28Q9UKQ2 775 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 COL4A1P02462 1669 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ZSCAN5CA6NGD5 496 aaPredicted RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 FGBP02675 491 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 S100BP04271 92 aaPredicted RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 MAGEA4P43358 317 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 TUBP50607 506 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ZNF143P52747 638 aaPredicted RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 ZNF449Q6P9G9 518 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 NPAS4Q8IUM7 802 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 PPIL6Q8IXY8 311 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 JOSD2Q8TAC2 188 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 CASKIN2Q8WXE0 1202 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 TFAP2BQ92481 460 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 DUSP16Q9BY84 665 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 CNOT10Q9H9A5 744 aaKnown RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 SIX2Q9NPC8 291 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 PFDN4Q9NQP4 134 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ABCC13Q9NSE7 274 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ABCF3Q9NUQ8 709 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 SPG21Q9NZD8 308 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 FLRT1Q9NZU1 646 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 AJAP1Q9UKB5 411 aaPredicted RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 FIS1Q9Y3D6 152 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 SCN9AQ15858 1988 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 EDIL3O43854 480 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 TSPAN3O60637 253 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 RHOCP08134 193 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 TYK2P29597 1187 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ACAP1Q15027 740 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 FAM187BQ17R55 369 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 B3GNT9Q6UX72 402 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 TAS2R42Q7RTR8 314 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 RAB44Q7Z6P3 723 aaPredicted RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 UNC45BQ8IWX7 931 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 ZNF669Q96BR6 464 aaPredicted RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 SLC13A1Q9BZW2 595 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 OLA1Q9NTK5 396 aaKnown RBP9.42□□□□□ -0.9
LIG4-202ENST00000405925 TMEM161AQ9NX61 479 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 FAM8A1Q9UBU6 413 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 VPS28Q9UK41 221 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 VANGL2Q9ULK5 521 aa9.42□□□□□ -0.9
LIG4-202ENST00000405925 IGKV6D-21A0A0A0MT36 114 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 OR6C75A6NL08 312 aa9.41□□□□□ -0.9
LIG4-202ENST00000405925 SH3BP5O60239 455 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms