RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CEMIPQ8WUJ3 1361 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 KPNA3O00505 521 aaPredicted RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 RNF168Q8IYW5 571 aaPredicted RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 PURBQ96QR8 312 aaKnown RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 ZSCAN32Q9NX65 697 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 PXDNQ92626 1479 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 ZNF720Q7Z2F6 126 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 ZFYVE1Q9HBF4 777 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 PHF20L1A8MW92 1017 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 JCHAINP01591 159 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 RPLP2P05387 115 aaKnown RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 COILP38432 576 aaPredicted RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 RAD23BP54727 409 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 PTPN11Q06124 597 aaPredicted RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 FBXO36Q8NEA4 188 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 FBXO44Q9H4M3 255 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 AGTP01019 485 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 DDR1Q08345 913 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 POU6F1Q14863 301 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 ATP13A1Q9HD20 1204 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 RPS6KB2Q9UBS0 482 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 CDH16O75309 829 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 CDH8P55286 799 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 CNTN1Q12860 1018 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 TPCN2Q8NHX9 752 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 ECSITQ9BQ95 431 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 TRIM49D1C9J1S8 452 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 CYP2F1P24903 491 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 CACHD1Q5VU97 1274 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 TATDN2Q93075 761 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 TUBGCP3Q96CW5 907 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 GAD1Q99259 594 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 PTPRHQ9HD43 1115 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 LOC100653049A0A140TA62 436 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 KRT34O76011 436 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 GLP2RO95838 553 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 POLR2EP19388 210 aaKnown RBP11.71□□□□□ -0.54
TTC28-201ENST00000397906 YWHAQP27348 245 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 VN1R5Q7Z5H4 357 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 KATNA1O75449 491 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 LPPQ93052 612 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 THTPAQ9BU02 230 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 GRID1Q9ULK0 1009 aa11.71□□□□□ -0.54
TTC28-201ENST00000397906 A0A1W2PQJ5 194 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SH3BGRLO75368 114 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 TGFB3P10600 412 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SERPINB5P36952 375 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 TUBP50607 506 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 GRAMD4Q6IC98 578 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ZCCHC17Q9NP64 241 aaKnown RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 LRRIQ3A6PVS8 624 aaPredicted RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 NDUFV1P49821 464 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ANO5Q75V66 913 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 TINF2Q9BSI4 451 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 MANSC1Q9H8J5 431 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 MICAL2O94851 1124 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 LGALS2P05162 132 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SPATA31D3P0C874 917 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SKOR1P84550 965 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 EIF2B5Q13144 721 aaKnown RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 PPIL2Q13356 520 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 C11orf63Q6NUN7 778 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SPATA31D4Q6ZUB0 917 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 PCYOX1LQ8NBM8 494 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SLC2A14Q8TDB8 520 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 PIF1Q9H611 641 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 TLL1O43897 1013 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 GARTP22102 1010 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 USP38Q8NB14 1042 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ZBTB45Q96K62 511 aaPredicted RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 O00370 1275 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 CHUKO15111 745 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 GPR142Q7Z601 462 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ZSWIM2Q8NEG5 633 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 HELQQ8TDG4 1101 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ANKS1AQ92625 1134 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 BARX2Q9UMQ3 279 aaPredicted RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 EIF3LQ9Y262 564 aaKnown RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 MGAT4DA6NG13 374 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 PRKAA1Q13131 559 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 PDK2Q15119 407 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 E2F4Q16254 413 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 ERI2A8K979 691 aaKnown RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 FAM47E-STBD1D6RA91 191 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 CTSEP14091 401 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 PTPRAP18433 802 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 SCNN1GP51170 649 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 RPS7P62081 194 aaKnown RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 C16orf89Q6UX73 402 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 KIAA1324Q6UXG2 1013 aaKnown RBP11.7□□□□□ -0.54
TTC28-201ENST00000397906 RAD9BQ6WBX8 426 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 RXFP2Q8WXD0 754 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 FAM111AQ96PZ2 611 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 RAMP2O60895 175 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 CCDC159P0C7I6 412 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 TPH1P17752 444 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 CPA2P48052 419 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 RERGLQ9H628 205 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 GPRC5DQ9NZD1 345 aa11.7□□□□□ -0.54
TTC28-201ENST00000397906 CYP51A1Q16850 503 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms