RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 IMPDH2P12268 514 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 NAMPTP43490 491 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 ATN1P54259 1190 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 MMRN1Q13201 1228 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 TRIP4Q15650 581 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 NEXMIFQ5QGS0 1516 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 LRRC8DQ7L1W4 858 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 RSPH1Q8WYR4 309 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 HOXD10P28358 340 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CACNA2D1P54289 1103 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 PDIA6Q15084 440 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 PDPK2PQ6A1A2 396 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 ZBTB49Q6ZSB9 765 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CROCCP3Q8IVE0 287 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 AENQ8WTP8 325 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 MLPHQ9BV36 600 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 WDCPQ9H6R7 721 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CTNNAL1Q9UBT7 734 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 ACOT9Q9Y305 439 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 UBE2Q2LH0YL09 131 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 RPS6KA5O75582 802 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CYP2C9P11712 490 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 SOAT1P35610 550 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 RGS2P41220 211 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 HPCAP84074 193 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 NFYCQ13952 458 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 SEC23AQ15436 765 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 SDE2Q6IQ49 451 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 GTF3C2Q8WUA4 911 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 USP13Q92995 863 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 TMEM121Q9BTD3 319 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 FHDC1Q9C0D6 1143 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 RMND5AQ9H871 391 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 DPP3Q9NY33 737 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CRLS1Q9UJA2 301 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 DRG1Q9Y295 367 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CEMIPQ8WUJ3 1361 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM25AB3EWG3 89 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM25CB3EWG5 89 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM25GB3EWG6 89 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 F8W810 466 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 CYTH3O43739 400 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 VPS26AO75436 327 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 GYS1P13807 737 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 SLC34A1Q06495 639 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 ZNF844Q08AG5 666 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 MGAT5Q09328 741 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 TBX2Q13207 712 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 NTRK3Q16288 839 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 KCNT1Q5JUK3 1230 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 SPDYCQ5MJ68 293 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 NT5DC1Q5TFE4 455 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 KHDRBS2Q5VWX1 349 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 GLB1LQ6UWU2 654 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 ZNF720Q7Z2F6 126 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 GATAD2AQ86YP4 633 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 OR8H2Q8N162 312 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 ATP6V0D2Q8N8Y2 350 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 TAAR1Q96RJ0 339 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 OSBPL10Q9BXB5 764 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 SPATA16Q9BXB7 569 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 RNF112Q9ULX5 631 aa10.56□□□□□ -0.72
LIMCH1-203ENST00000396595 MYCP01106 439 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 ICAM1P05362 532 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 S100A6P06703 90 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 RAD23AP54725 363 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 MTTPP55157 894 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 C1QBPQ07021 282 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 MPP3Q13368 585 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 HIST2H2ACQ16777 129 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 HIST2H2AA3Q6FI13 130 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FAM45BPQ6NSW5 357 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 TIGD7Q6NT04 549 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 FBXL16Q8N461 479 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 EIF1ADQ8N9N8 165 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 ACTL9Q8TC94 416 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 GLMNQ92990 594 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SLITRK1Q96PX8 696 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SPRTNQ9H040 489 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 PDZK1P1A8MUH7 402 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 NPTXRO95502 500 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 ATP5BP06576 529 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 MAPK1P28482 360 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 NPTX2P47972 431 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SARSP49591 514 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 PRIM2P49643 509 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 TUBA3CQ13748 450 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 LAMC2Q13753 1193 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 PCNX4Q63HM2 1172 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 STRA8Q7Z7C7 330 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SAMD3Q8N6K7 520 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 KYQ8NBH2 561 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 PGM2Q96G03 612 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 CCSER2Q9H7U1 834 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 CHST12Q9NRB3 414 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 NMRK1Q9NWW6 199 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 USE1Q9NZ43 259 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SPASTQ9UBP0 616 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 MYO3AQ8NEV4 1616 aa10.55□□□□□ -0.72
LIMCH1-203ENST00000396595 SNTNA6NMZ2 147 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms