RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ST7Q9NRC1 585 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 CFAP97Q9P2B7 532 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 A0A1W2PQC6 194 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 KANSL1LA0AUZ9 987 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 MAN2B1O00754 1011 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 AOC1P19801 751 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 SOX5P35711 763 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 RUNX3Q13761 415 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 ITPRIPL2Q3MIP1 535 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 TRIM68Q6AZZ1 485 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 C1orf228Q6PIY5 440 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 NDRG1Q92597 394 aaKnown RBP22.78■■□□□ 1.24
CLN3-207ENST00000395653 NAP1L5Q96NT1 182 aaPredicted RBP22.78■■□□□ 1.24
CLN3-207ENST00000395653 KLF16Q9BXK1 252 aaPredicted RBP22.78■■□□□ 1.24
CLN3-207ENST00000395653 TSPY26PQ9H489 355 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 EBF3Q9H4W6 596 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 CYTH4Q9UIA0 394 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 WNT6Q9Y6F9 365 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 ZDBF2Q9HCK1 2354 aa22.78■■□□□ 1.24
CLN3-207ENST00000395653 E2F8A0AVK6 867 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 SHISA7A6NL88 538 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 YJEFN3A6XGL0 299 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 E7ENQ6 273 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 PIK3R2O00459 728 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 SLC9A3R1O14745 358 aaPredicted RBP22.77■■□□□ 1.24
CLN3-207ENST00000395653 SART1O43290 800 aaKnown RBP22.77■■□□□ 1.24
CLN3-207ENST00000395653 STAT1P42224 750 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 KPNA1P52294 538 aaPredicted RBP22.77■■□□□ 1.24
CLN3-207ENST00000395653 GOLGA8FQ08AF8 430 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 GOLGA8DPQ0D2H9 430 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 PDCLQ13371 301 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 EML3Q32P44 896 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 BTBD8Q5XKL5 378 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 ZNF852Q6ZMS4 543 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 TMEM110Q86TL2 294 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 ABCC13Q9NSE7 274 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 NUDT5Q9UKK9 219 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 CEP83Q9Y592 693 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 COL4A3Q01955 1670 aa22.77■■□□□ 1.24
CLN3-207ENST00000395653 STK25O00506 426 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 GFPT2O94808 682 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 ARSAP15289 507 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 FANCCQ00597 558 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 NR1I3Q14994 352 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 BSPRYQ5W0U4 402 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 RSRC2Q7L4I2 434 aaKnown RBP22.76■■□□□ 1.23
CLN3-207ENST00000395653 RALGPS2Q86X27 583 aaPredicted RBP22.76■■□□□ 1.23
CLN3-207ENST00000395653 PASD1Q8IV76 773 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 CPA6Q8N4T0 437 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 WDTC1Q8N5D0 677 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 EPS8L1Q8TE68 723 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 DDX1Q92499 740 aaKnown RBP22.76■■□□□ 1.23
CLN3-207ENST00000395653 ATP2A3Q93084 1043 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 NOX5Q96PH1 765 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 NELL2Q99435 816 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 OSBPL6Q9BZF3 934 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 MIS12Q9H081 205 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 LTB4R2Q9NPC1 389 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 OLA1Q9NTK5 396 aaKnown RBP22.76■■□□□ 1.23
CLN3-207ENST00000395653 TBC1D14Q9P2M4 693 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 MRPS17Q9Y2R5 130 aaKnown RBP22.76■■□□□ 1.23
CLN3-207ENST00000395653 SH3BP1Q9Y3L3 701 aa22.76■■□□□ 1.23
CLN3-207ENST00000395653 E5RJQ4 531 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 MDM4O15151 490 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 AVPR2P30518 371 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 CTHP32929 405 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 VCPP55072 806 aaKnown RBP22.75■■□□□ 1.23
CLN3-207ENST00000395653 NOP9Q86U38 636 aaKnown RBP22.75■■□□□ 1.23
CLN3-207ENST00000395653 ZNF677Q86XU0 584 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 SCUBE3Q8IX30 993 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 C1orf131Q8NDD1 294 aaKnown RBP22.75■■□□□ 1.23
CLN3-207ENST00000395653 PJA1Q8NG27 643 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 TTC8Q8TAM2 541 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 GOLGA1Q92805 767 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 FOXQ1Q9C009 403 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 PDCL3Q9H2J4 239 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 ECT2Q9H8V3 914 aa22.75■■□□□ 1.23
CLN3-207ENST00000395653 OTOL1A6NHN0 477 aaPredicted RBP22.74■■□□□ 1.23
CLN3-207ENST00000395653 SPECC1L-ADORA2AF8WAN1 911 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 NFATC1O95644 943 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 CD72P21854 359 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 CDH5P33151 784 aaPredicted RBP22.74■■□□□ 1.23
CLN3-207ENST00000395653 SOX9P48436 509 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 EFEMP1Q12805 493 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 CACNA2D4Q7Z3S7 1137 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 MIB1Q86YT6 1006 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 TMEM105Q8N8V8 129 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 CLEC4CQ8WTT0 213 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 FAM3CQ92520 227 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 OTUB2Q96DC9 234 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 PPP1R13BQ96KQ4 1090 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 CPXM1Q96SM3 734 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 LINC00597Q9H2U6 94 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 RASAL2Q9UJF2 1139 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 NOCTQ9UK39 431 aaKnown RBP22.74■■□□□ 1.23
CLN3-207ENST00000395653 STRIP2Q9ULQ0 834 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 SIT1Q9Y3P8 196 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 KMT2EQ8IZD2 1858 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 PAPSS1O43252 624 aaPredicted RBP22.74■■□□□ 1.23
CLN3-207ENST00000395653 LTFP02788 710 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms