RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 STK39Q9UEW8 545 aa18.99■□□□□ 0.63
CCDC88C-203ENST00000389856 TRIM43BA6NCK2 446 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 RARAP10276 462 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 CSF2RAP15509 400 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 GRIK1P39086 918 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 PTGIRP43119 386 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 MAGEA11P43364 429 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 IRAK1P51617 712 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 DAOAP59103 153 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 ATP11AP98196 1134 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 TRADDQ15628 312 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 CDO1Q16878 200 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 CCDC142Q17RM4 750 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 PRELID2Q8N945 189 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 CMASQ8NFW8 434 aaPredicted RBP18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 CENPIQ92674 756 aaPredicted RBP18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 TRIM43Q96BQ3 446 aaPredicted RBP18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 PCSK1NQ9UHG2 260 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 PTPRDP23468 1912 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 PATJQ8NI35 1801 aa18.98■□□□□ 0.63
CCDC88C-203ENST00000389856 NLRC5Q86WI3 1866 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 H0YGN5 161 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 MDM4O15151 490 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 LAG3P18627 525 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 KDELR1P24390 212 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 KRT81Q14533 505 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 TAF5Q15542 800 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 C15orf59Q2T9L4 293 aaPredicted RBP18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 USP41Q3LFD5 358 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 SCYL2Q6P3W7 929 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 CCDC137Q6PK04 289 aaKnown RBP18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 LRRTM3Q86VH5 581 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 PSTKQ8IV42 348 aaKnown RBP18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 CCDC105Q8IYK2 499 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 ZMIZ2Q8NF64 920 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 CLEC4CQ8WTT0 213 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 ZNF558Q96NG5 402 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 SLC2A13Q96QE2 648 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 KCNK16Q96T55 309 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 MAK16Q9BXY0 300 aaKnown RBP18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 TXLNGYQ9BZA5 131 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 MTRF1LQ9UGC7 380 aaKnown RBP18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 NFS1Q9Y697 457 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 DNAH12Q6ZR08 3092 aa18.97■□□□□ 0.63
CCDC88C-203ENST00000389856 EIF3HO15372 352 aaKnown RBP eCLIP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 GAS8O95995 478 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 KRT14P02533 472 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 COILP38432 576 aaPredicted RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 CDKN2BP42772 138 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 SULT1E1P49888 294 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 WDR5P61964 334 aaKnown RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 KLF1Q13351 362 aaPredicted RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 TFDP2Q14188 446 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 CCNG2Q16589 344 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 CEP85LQ5SZL2 805 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 MFSD7Q6UXD7 560 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 BEND5Q7L4P6 421 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 DDX42Q86XP3 938 aaKnown RBP eCLIP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 DEFB106AQ8N104 65 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 ARFGAP1Q8N6T3 406 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 SPPL2BQ8TCT7 592 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 HSPH1Q92598 858 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 C8orf48Q96LL4 319 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 GPR62Q9BZJ7 368 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 PLEKHA4Q9H4M7 779 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 AAASQ9NRG9 546 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 ZDHHC18Q9NUE0 388 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 TMLHEQ9NVH6 421 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 KLHL11Q9NVR0 708 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 ABI2Q9NYB9 513 aaPredicted RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 NR2E1Q9Y466 385 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 KIAA0100Q14667 2235 aaKnown RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 hCG_1818297A0A087WSY0 165 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 ZNF487B1APH4 448 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 HHLA1C9JL84 531 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 PI4K2BG5E9Z4 385 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 ECEL1O95672 775 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 F9P00740 461 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 LTFP02788 710 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 CPB1P15086 417 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 TCF4P15884 667 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 AIF1P55008 147 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 DHX9Q08211 1270 aaKnown RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 BTG3Q14201 252 aaPredicted RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 UAP1Q16222 522 aaPredicted RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 DCAF6Q58WW2 860 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 PM20D1Q6GTS8 502 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 KIAA1841Q6NSI8 718 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 TRNP1Q6NT89 227 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 ARHGAP18Q8N392 663 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 TMEM209Q96SK2 561 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 C11orf84Q9BUA3 381 aaPredicted RBP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 HEMGNQ9BXL5 484 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 FAM107BQ9H098 131 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 NEUROG2Q9H2A3 272 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 FBXO44Q9H4M3 255 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 PRDM16Q9HAZ2 1276 aa18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.96■□□□□ 0.63
CCDC88C-203ENST00000389856 NR1D1P20393 614 aa18.95■□□□□ 0.62
CCDC88C-203ENST00000389856 IL1R2P27930 398 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms