RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 DNAJC24Q6P3W2 148 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 C3orf62Q6ZUJ4 267 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 ULK2Q8IYT8 1036 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 HIPK4Q8NE63 616 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 HAPLN3Q96S86 360 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 TMEM121Q9BTD3 319 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 MMADHCQ9H3L0 296 aaPredicted RBP18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 RABGEF1Q9UJ41 708 aa18.39■□□□□ 0.54
SQSTM1-202ENST00000389805 LPXNO60711 386 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 KRT1P04264 644 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 CXCL8P10145 99 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 CD19P15391 556 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 VAV1P15498 845 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 ZNF699Q32M78 642 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 CENPUQ71F23 418 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 LCA5Q86VQ0 697 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 XYLT2Q9H1B5 865 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 RNPEPQ9H4A4 650 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 IP6K2Q9UHH9 426 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 CLUHO75153 1309 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 ZSCAN9O15535 394 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 TTLL12Q14166 644 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 SMTNL2Q2TAL5 461 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 MSS51Q4VC12 460 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 DENND1BQ6P3S1 775 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.39■□□□□ 0.531e-6■■□□□ 14.4
SQSTM1-202ENST00000389805 SDCCAG8Q86SQ7 713 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 ZBTB8OSQ8IWT0 167 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 SULF1Q8IWU6 871 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 GSTCDQ8NEC7 633 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 PYROXD1Q8WU10 500 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 PPP2R3CQ969Q6 453 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 SLITRK1Q96PX8 696 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 SMYD3Q9H7B4 428 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 CYTH4Q9UIA0 394 aa18.39■□□□□ 0.53
SQSTM1-202ENST00000389805 MCM3APO60318 1980 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 WDR90Q96KV7 1748 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 DCAF8L1A6NGE4 600 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 CCDC160A6NGH7 325 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 ASPAP45381 313 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 SFT2D3Q587I9 215 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 KCNT1Q5JUK3 1230 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 SYCP2LQ5T4T6 812 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 C6orf163Q5TEZ5 329 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 EFCAB12Q6NXP0 572 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 MTBPQ96DY7 904 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 MECRQ9BV79 373 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 SLC24A2Q9UI40 661 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 SLC4A7Q9Y6M7 1214 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 TCRBV5S1A1TA0A578 114 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 SGK1O00141 431 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 ALOX15BO15296 676 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 LIASO43766 372 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 TPP2P29144 1249 aaPredicted RBP18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 CRABP2P29373 138 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 ALDH18A1P54886 795 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 ATF7IP2Q5U623 682 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 TMPRSS6Q8IU80 811 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 BANPQ8N9N5 519 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 TMEM35BQ8NCS4 154 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 USP6NLQ92738 828 aa18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 DCPSQ96C86 337 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-202ENST00000389805 CCDC195A0A1B0GUA6 201 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 RFC1P35251 1148 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 RAP1GDS1P52306 607 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 MXD4Q14582 209 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 MYLK4Q86YV6 388 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 VPS11Q9H270 941 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 PTPRFP10586 1907 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 A0A0G2JLL6 359 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 ARHGAP42A6NI28 874 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 DNAJC6O75061 913 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 DYNLT1P63172 113 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 KRT72Q14CN4 511 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 EFHC2Q5JST6 749 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 FNBP1LQ5T0N5 605 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 ANKRD22Q5VYY1 191 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 PRRT2Q7Z6L0 340 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 EMC1Q8N766 993 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 OLFM3Q96PB7 478 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 DDX18Q9NVP1 670 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 EVPLQ92817 2033 aa18.37■□□□□ 0.53
SQSTM1-202ENST00000389805 IGKV6-21A0A0C4DH24 114 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 SORBS2O94875 1100 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 MT-ND3P03897 115 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 TXNP10599 105 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 ACTR3P61158 418 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 DLG1Q12959 904 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 MED21Q13503 144 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 HIF1AQ16665 826 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 PTPN20Q4JDL3 420 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 MPZL3Q6UWV2 235 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 PRPF39Q86UA1 669 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 KIAA0319LQ8IZA0 1049 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 OR6Y1Q8NGX8 325 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 JOSD2Q8TAC2 188 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 ABTB1Q969K4 478 aaPredicted RBP18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 PTPRHQ9HD43 1115 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 HMGXB4Q9UGU5 601 aa18.36■□□□□ 0.53
SQSTM1-202ENST00000389805 GPR25O00155 361 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms