RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 NOVP48745 357 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 USP17L24Q0WX57 530 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 PRR16Q569H4 304 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 DCAF6Q58WW2 860 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 ANKRD22Q5VYY1 191 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 SNRNP48Q6IEG0 339 aaKnown RBP13.38□□□□□ -0.27
PRPF4-201ENST00000374198 LLGL2Q6P1M3 1020 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 USP17L6PQ6QN14 398 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 C16orf86Q6ZW13 317 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 FAM178BQ8IXR5 827 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 KCNK16Q96T55 309 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 TRIM56Q9BRZ2 755 aaKnown RBP13.38□□□□□ -0.27
PRPF4-201ENST00000374198 SHCBP1LQ9BZQ2 653 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 INO80BQ9C086 356 aaPredicted RBP13.38□□□□□ -0.27
PRPF4-201ENST00000374198 RIMS3Q9UJD0 308 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 MINPP1Q9UNW1 487 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 JAG2Q9Y219 1238 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 GIT1Q9Y2X7 761 aa13.38□□□□□ -0.27
PRPF4-201ENST00000374198 E7ESA3 106 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 TBC1D12O60347 775 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 PSMC3P17980 439 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 C21orf59P57076 290 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 C1orf220Q5T0J3 134 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 C1orf186Q6ZWK4 172 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 MAPKAPK5Q8IW41 473 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 PPIL6Q8IXY8 311 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GALNT4Q8N4A0 578 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 SGF29Q96ES7 293 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 ZNF512Q96ME7 567 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 NRDE2Q9H7Z3 1164 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 SGK1O00141 431 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 CYB561D2O14569 222 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 FAM189A1O60320 539 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 SIN3BO75182 1162 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 ZBTB11O95625 1053 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 TSHRP16473 764 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 HIBADHP31937 336 aaKnown RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GSDMBQ8TAX9 411 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 CHPT1Q8WUD6 406 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 STARD8Q92502 1023 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 CMTM5Q96DZ9 223 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 TMEM121Q9BTD3 319 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GPBP1L1Q9HC44 474 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 KLHL11Q9NVR0 708 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 SEL1LQ9UBV2 794 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 APOBEC2Q9Y235 224 aaKnown RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 PI4K2BG5E9Z4 385 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 FOXD2O60548 495 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 H6PDO95479 791 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 L1CAMP32004 1257 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 KCNC4Q03721 635 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 MTM1Q13496 603 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GRAPQ13588 217 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 MYBPC2Q14324 1141 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 INAQ16352 499 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 BBS9Q3SYG4 887 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 NANOGP8Q6NSW7 305 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GPR180Q86V85 440 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 GRAPLQ8TC17 118 aaPredicted RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 TFB1MQ8WVM0 346 aaKnown RBP13.37□□□□□ -0.27
PRPF4-201ENST00000374198 NLRP7Q8WX94 980 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 CPT1BQ92523 772 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 APOL6Q9BWW8 343 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 PCIF1Q9H4Z3 704 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 VPS45Q9NRW7 570 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 EBF1Q9UH73 591 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 RNF11Q9Y3C5 154 aa13.37□□□□□ -0.27
PRPF4-201ENST00000374198 TBX3O15119 743 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 BBOX1O75936 387 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 ITGAVP06756 1048 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 UNGP13051 313 aaPredicted RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 ATF7P17544 494 aaPredicted RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 MXI1P50539 228 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 STX3Q13277 289 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 OGFOD2Q6N063 350 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 MOXD1Q6UVY6 613 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 WDR75Q8IWA0 830 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 CHERPQ8IWX8 916 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 NAT8LQ8N9F0 302 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 EIF2AK1Q9BQI3 630 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 TPK1Q9H3S4 243 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 USTQ9Y2C2 406 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 CNOT3O75175 753 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 SNHG28P0DPA3 235 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 NEK2P51955 445 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 NDST2P52849 883 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 MRPS5P82675 430 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 C2CD6Q53TS8 623 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 TMEM214Q6NUQ4 689 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 FRMD7Q6ZUT3 714 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 RCOR2Q8IZ40 523 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 LRRC47Q8N1G4 583 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 RNF169Q8NCN4 708 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 CPA5Q8WXQ8 436 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 ISOC1Q96CN7 298 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 DCUN1D5Q9BTE7 237 aa13.36□□□□□ -0.27
PRPF4-201ENST00000374198 STN1Q9H668 368 aaKnown RBP13.36□□□□□ -0.27
PRPF4-201ENST00000374198 COPS7BQ9H9Q2 264 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms