RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ANKZF1Q9H8Y5 726 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 STK39Q9UEW8 545 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 SLC27A5Q9Y2P5 690 aa19.51■□□□□ 0.71
CLN3-204ENST00000357857 PLXNA4Q9HCM2 1894 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 TCRBV7S2A1N4TA0A589 114 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 TLL1O43897 1013 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 PTPN7P35236 360 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 DUSP4Q13115 394 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 PPP2R5EQ16537 467 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 BOLA3Q53S33 107 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 C8orf74Q6P047 294 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 CMASQ8NFW8 434 aaPredicted RBP19.5■□□□□ 0.71
CLN3-204ENST00000357857 SP7Q8TDD2 431 aaPredicted RBP19.5■□□□□ 0.71
CLN3-204ENST00000357857 RRN3Q9NYV6 651 aa19.5■□□□□ 0.71
CLN3-204ENST00000357857 FGF18O76093 207 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 NCAM1P13591 858 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 KDELR1P24390 212 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 RPL10AP62906 217 aaKnown RBP19.49■□□□□ 0.71
CLN3-204ENST00000357857 GLE1Q53GS7 698 aaKnown RBP19.49■□□□□ 0.71
CLN3-204ENST00000357857 OTUD1Q5VV17 481 aaPredicted RBP19.49■□□□□ 0.71
CLN3-204ENST00000357857 BSPRYQ5W0U4 402 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 ANKS1BQ7Z6G8 1248 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 ZDHHC14Q8IZN3 488 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 KCTD6Q8NC69 237 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 TEKT4Q8WW24 435 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 HERPUD2Q9BSE4 406 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 LRRC1Q9BTT6 524 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 HEMGNQ9BXL5 484 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 DDX47Q9H0S4 455 aaKnown RBP19.49■□□□□ 0.71
CLN3-204ENST00000357857 FBXO44Q9H4M3 255 aa19.49■□□□□ 0.71
CLN3-204ENST00000357857 C3orf70A6NLC5 250 aaPredicted RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 M0QYT0 321 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 SOAT2O75908 522 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 ENDOD1O94919 500 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 CDKN2BP42772 138 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 ATXN1P54253 815 aaKnown RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 PITX1P78337 314 aaPredicted RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 SIX1Q15475 284 aaPredicted RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 TFDP3Q5H9I0 405 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 BEND5Q7L4P6 421 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 BNIPLQ7Z465 357 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 PRELID2Q8N945 189 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 STKLD1Q8NE28 680 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 SPATA17Q96L03 361 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-204ENST00000357857 CALCOCO1Q9P1Z2 691 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 AFF4Q9UHB7 1163 aaKnown RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 SCML2Q9UQR0 700 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 hCG_1818297A0A087WSY0 165 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 TARSL2A2RTX5 802 aaKnown RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 MDM4O15151 490 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 PHF2O75151 1096 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 RTN3O95197 1032 aaPredicted RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 RDXP35241 583 aaKnown RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 YWHAGP61981 247 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-204ENST00000357857 KLF1Q13351 362 aaPredicted RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 TPGS2Q68CL5 300 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 GPR65Q8IYL9 337 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 SLC7A14Q8TBB6 771 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 EDEM1Q92611 657 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 SNRNP25Q9BV90 132 aaKnown RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 SLITRK6Q9H5Y7 841 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 MRPL17Q9NRX2 175 aaKnown RBP19.48■□□□□ 0.71
CLN3-204ENST00000357857 IL37Q9NZH6 218 aa19.48■□□□□ 0.71
CLN3-204ENST00000357857 KRT10P13645 584 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 DNAJB2P25686 324 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 CDH6P55285 790 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 DEUP1Q05D60 604 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 TAZQ16635 292 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 CYP1B1Q16678 543 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 ERMARDQ5T6L9 678 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 RASIP1Q5U651 963 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 BTBD8Q5XKL5 378 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 KAZNQ674X7 775 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 DENND5BQ6ZUT9 1274 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 ZNF461Q8TAF7 563 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 GPR152Q8TDT2 470 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 AUTS2Q8WXX7 1259 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 PARD6BQ9BYG5 372 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 ZBP1Q9H171 429 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.47■□□□□ 0.71
CLN3-204ENST00000357857 ABCC13Q9NSE7 274 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 COMMD8Q9NX08 183 aa19.47■□□□□ 0.71
CLN3-204ENST00000357857 SYNJ2BP-COX16A0A087WUM0 186 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 LCHNA4D1U4 455 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 ABLIM3O94929 683 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 TJP3O95049 919 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 TUFMP49411 452 aaKnown RBP19.46■□□□□ 0.71
CLN3-204ENST00000357857 ARSEP51690 589 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 USP46P62068 366 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 MRPS25P82663 173 aaKnown RBP19.46■□□□□ 0.71
CLN3-204ENST00000357857 NME3Q13232 169 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 KRT81Q14533 505 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 PDK2Q15119 407 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 SCD5Q86SK9 330 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 FAM131BQ86XD5 332 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 KLHL23Q8NBE8 558 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 CCDC26Q8TAB7 109 aa19.46■□□□□ 0.71
CLN3-204ENST00000357857 MAGOHBQ96A72 148 aaKnown RBP19.46■□□□□ 0.71
CLN3-204ENST00000357857 PNKPQ96T60 521 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms