RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ARID3BQ8IVW6 561 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 SLC16A10Q8TF71 515 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ZIM3Q96PE6 472 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PRKD2Q9BZL6 878 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ELOVL6Q9H5J4 265 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 MIEF1Q9NQG6 463 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 VTI1BQ9UEU0 232 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 VPS28Q9UK41 221 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PCDHB12Q9Y5F1 795 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 RNF17Q9BXT8 1623 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 ZNF609O15014 1411 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ADGRB3O60242 1522 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 A0A087WZ62 844 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 A0A088AWK7 358 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 GPR75-ASB3A0A0A6YYF3 556 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 GNG14A0A1W2PPG7 69 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ANKRD65E5RJM6 399 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PLA2G6O60733 806 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 CELF2O95319 508 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 MAPTP10636 758 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 GZMAP12544 262 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ZNF10P21506 573 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 CCNG1P51959 295 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ZNF135P52742 658 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 ATXN3P54252 364 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 FUT11Q495W5 492 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 FAM117BQ6P1L5 589 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 TAF2Q6P1X5 1199 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 FAM180AQ6UWF9 173 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 FBXO36Q8NEA4 188 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 C19orf18Q8NEA5 215 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 HNRNPLLQ8WVV9 542 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 DPF2Q92785 391 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 RMND5BQ96G75 393 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 TMEM237Q96Q45 408 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PABPC3Q9H361 631 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 FANCEQ9HB96 536 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 IARS2Q9NSE4 1012 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 GGT7Q9UJ14 662 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 CNTNAP4Q9C0A0 1308 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 CCDC189A1A4V9 331 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 SMIM22K7EJ46 135 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 NDUFB5O43674 189 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PRLRP16471 622 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 HOXB8P17481 243 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 MSH3P20585 1137 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 GRK4P32298 578 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PIK3CGP48736 1102 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 EN1Q05925 392 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 CNGA2Q16280 664 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 CCDC153Q494R4 210 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 Q4G0T1 1027 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ALFQ53S48 1182 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 STOX1Q6ZVD7 989 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 DSG4Q86SJ6 1040 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 L3MBTL3Q96JM7 780 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 FAM111AQ96PZ2 611 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ASB2Q96Q27 587 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 MCCC1Q96RQ3 725 aaPredicted RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 TARS2Q9BW92 718 aaKnown RBP6.66□□□□□ -1.34
UPF2-201ENST00000356352 SLITRK2Q9H156 845 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 FBXO44Q9H4M3 255 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 CAAP1Q9H8G2 361 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 CAPN10Q9HC96 672 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 VTA1Q9NP79 307 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 RAD18Q9NS91 495 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 TMCO1Q9UM00 188 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 GTF2A1LQ9UNN4 478 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 PLA2G4CQ9UP65 541 aa6.66□□□□□ -1.34
UPF2-201ENST00000356352 ALKQ9UM73 1620 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ZBTB39O15060 712 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 FKBP6O75344 327 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 CAMTA2O94983 1202 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 DNAJB2P25686 324 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 AVPR1AP37288 418 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ITGA1P56199 1179 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 COX10Q12887 443 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 NEK10Q6ZWH5 1172 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 FBXO33Q7Z6M2 555 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 SLC26A11Q86WA9 606 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 TC2NQ8N9U0 490 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 GLMNQ92990 594 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 KCTD14Q9BQ13 255 aaPredicted RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 ADI1Q9BV57 179 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 FICDQ9BVA6 458 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 SERHL2Q9H4I8 314 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 SERHLQ9NQF3 203 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 AVENQ9NQS1 362 aaPredicted RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 UXTQ9UBK9 157 aaPredicted RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 TSC22D4Q9Y3Q8 395 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 SF3B1O75533 1304 aaKnown RBP eCLIP6.65□□□□□ -1.34
UPF2-201ENST00000356352 MAGI3Q5TCQ9 1506 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ATMINO43313 823 aaPredicted RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 CKMP06732 381 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 THP07101 528 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 UQCRBP14927 111 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ACO1P21399 889 aaKnown RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 DDX39BQ13838 428 aaKnown RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 GRTP1Q5TC63 336 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 HLA-DQA1Q5Y7H0 255 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms