RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 LINC01599Q8WXQ3 324 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 C18orf25Q96B23 403 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-203ENST00000354674 AGPAT1Q99943 283 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 ADAM2Q99965 735 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 APOL6Q9BWW8 343 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 A0A0J9YVX5 310 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 C9IYK1 514 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 CAPN9O14815 690 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 DNAJC6O75061 913 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 TJP3O95049 919 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 CYP11B1P15538 503 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 CHRNB2P17787 502 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 COG7P83436 770 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 PLEKHG4Q58EX7 1191 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 NOP9Q86U38 636 aaKnown RBP10.54□□□□□ -0.72
SYNE1-203ENST00000354674 SLC47A2Q86VL8 602 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 SLC15A3Q8IY34 581 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 ZBTB8BQ8NAP8 495 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-203ENST00000354674 HPDLQ96IR7 371 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 NOX5Q96PH1 765 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 FTHL17Q9BXU8 183 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 UBN1Q9NPG3 1134 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 KLK14Q9P0G3 267 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 HSFX1Q9UBD0 423 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 NAGPAQ9UK23 515 aa10.54□□□□□ -0.72
SYNE1-203ENST00000354674 XPOTO43592 962 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 PQBP1O60828 265 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 E2F6O75461 281 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 BAG2O95816 211 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 CXCL10P02778 98 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 PSMD7P51665 324 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SOX4Q06945 474 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 MGAT5Q09328 741 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 BTG3Q14201 252 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SLC29A2Q14542 456 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ITIH4Q14624 930 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SMUG1Q53HV7 270 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 C9orf57Q5W0N0 161 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 TRIM67Q6ZTA4 783 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 LIMS2Q7Z4I7 341 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 DAAM2Q86T65 1068 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SPATA24Q86W54 205 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ECHDC2Q86YB7 292 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SPATA16Q9BXB7 569 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ADAM7Q9H2U9 754 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 CYP3A43Q9HB55 503 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 R3HDM2Q9Y2K5 976 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ARL5CA6NH57 179 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 PARNO95453 639 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 EOMESO95936 686 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 KRT19P08727 400 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 TRIM60Q495X7 471 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF667Q5HYK9 610 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 GLRA4Q5JXX5 417 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 EMC10Q5UCC4 262 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 VPS36Q86VN1 386 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF677Q86XU0 584 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 RBBP8NLQ8NC74 664 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SLC20A1Q8WUM9 679 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SPOCK2Q92563 424 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 TBC1D10AQ9BXI6 508 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 MYLK2Q9H1R3 596 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 TBX21Q9UL17 535 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 POLIQ9UNA4 740 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 WASF2Q9Y6W5 498 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 KRIT1O00522 736 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ITGA2BP08514 1039 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 VARSP26640 1264 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 HOXD12P35452 270 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ADARP55265 1226 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 TNNC1P63316 161 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 CDR2Q01850 454 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 WDR72Q3MJ13 1102 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 DSTYKQ6XUX3 929 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SLC24A5Q71RS6 500 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SATL1Q86VE3 508 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ATP11CQ8NB49 1132 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 APBB2Q92870 758 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 PGBD4Q96DM1 585 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ABHD8Q96I13 439 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 ZFP42Q96MM3 310 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 OXCT2Q9BYC2 517 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 NSRP1Q9H0G5 558 aaKnown RBP10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SDCBP2Q9H190 292 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 C11orf49Q9H6J7 331 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 CISHQ9NSE2 258 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 SUN2Q9UH99 717 aa10.53□□□□□ -0.72
SYNE1-203ENST00000354674 BTNL10A8MVZ5 291 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 PPEF2O14830 753 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 ATN1P54259 1190 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-203ENST00000354674 YWHAEP62258 255 aaKnown RBP10.52□□□□□ -0.73
SYNE1-203ENST00000354674 FMO1Q01740 532 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 TLE2Q04725 743 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 DMPKQ09013 629 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 INCA1Q0VD86 236 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 LONRF1Q17RB8 773 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 GRAMD4Q6IC98 578 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 TMEM53Q6P2H8 277 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 LRRC8BQ6P9F7 803 aa10.52□□□□□ -0.73
SYNE1-203ENST00000354674 TMC3Q7Z5M5 1100 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms