RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RNF141Q8WVD5 230 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 KRT35Q92764 455 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CDCA5Q96FF9 252 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ZBTB45Q96K62 511 aaPredicted RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 DHRS1Q96LJ7 313 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 IWS1Q96ST2 819 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 ZNF577Q9BSK1 485 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PAGR1Q9BTK6 254 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 LRRC1Q9BTT6 524 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NUP58Q9BVL2 599 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 YIPF2Q9BWQ6 316 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 STK33Q9BYT3 514 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 PRDM12Q9H4Q4 367 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 CYP26B1Q9NR63 512 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 TMEM30AQ9NV96 361 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 SLC5A4Q9NY91 659 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 HSPBP1Q9NZL4 362 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 LMCD1Q9NZU5 365 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 FAM184BQ9ULE4 1060 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 AGTPBP1Q9UPW5 1226 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 DIS3Q9Y2L1 958 aaKnown RBP2.49□□□□□ -2.01
VPS54-202ENST00000354504 FAN1Q9Y2M0 1017 aa2.49□□□□□ -2.01
VPS54-202ENST00000354504 NOTOA8MTQ0 251 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GOLGA6L19H0YKK7 550 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PLD2O14939 933 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CLIC2O15247 247 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 P4HA2O15460 535 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 H2AFYO75367 372 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 STAM2O75886 525 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SERPINC1P01008 464 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CCDC175P0C221 793 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TRIM49P0CI25 452 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TRIM49CP0CI26 452 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GAP43P17677 238 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 IL4RP24394 825 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 KLRC2P26717 231 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ANXA13P27216 316 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SOX5P35711 763 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 QARSP47897 775 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 DSG1Q02413 1049 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SPAG1Q07617 926 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ADAM9Q13443 819 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PSMD6Q15008 389 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TCTN1Q2MV58 587 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 UBXN11Q5T124 520 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CPZQ66K79 652 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 DUPD1Q68J44 220 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TXNRD3NBQ6F5E7 133 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 TSHZ1Q6ZSZ6 1077 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 METTL13Q8N6R0 699 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 EIF1ADQ8N9N8 165 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 USP38Q8NB14 1042 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SPATA4Q8NEY3 305 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ZNF397Q8NF99 534 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 OR5B17Q8NGF7 314 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CASKIN2Q8WXE0 1202 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 BRI3BPQ8WY22 251 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 RUBCNQ92622 972 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 IQCDQ96DY2 449 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ZNF419Q96HQ0 510 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 HSPA12BQ96MM6 686 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 APBA2Q99767 749 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ACO2Q99798 780 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 TIPINQ9BVW5 301 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 INTS2Q9H0H0 1204 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 ASCC2Q9H1I8 757 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 RNPEPQ9H4A4 650 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ATP6V0A4Q9HBG4 840 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 LZTFL1Q9NQ48 299 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ADARB2Q9NS39 739 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 SLC12A6Q9UHW9 1150 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PACSIN2Q9UNF0 486 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 MRPL11Q9Y3B7 192 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 FRYQ5TBA9 3013 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 LOC102724159A0A0B4J2E5 919 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CCDC151A5D8V7 595 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 H3BS24 57 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 MPHOSPH10O00566 681 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 PSMA7O14818 248 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 MAFGO15525 162 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ATP8B1O43520 1251 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 ADAMTS4O75173 837 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SCGB1D2O95969 90 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 OAS1P00973 400 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 AFPP02771 609 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 LTFP02788 710 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 GJB1P08034 283 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 MSL3P1P0C860 447 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PYGMP11217 842 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CETPP11597 493 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SDHBP21912 280 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 CTNNA1P35221 906 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 GUCY2FP51841 1108 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 OXCT1P55809 520 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 SLC25A11Q02978 314 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 HSP90AA2PQ14568 343 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 TNIP1Q15025 636 aa2.48□□□□□ -2.01
VPS54-202ENST00000354504 PWP2Q15269 919 aaKnown RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 TPD52L1Q16890 204 aaPredicted RBP2.48□□□□□ -2.01
VPS54-202ENST00000354504 LY6KQ17RY6 165 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms