RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ASTE1Q2TB18 679 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-203ENST00000354098 BTBD8Q5XKL5 378 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 PARM1Q6UWI2 310 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 MON1BQ7L1V2 547 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 MSANTD4Q8NCY6 345 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 FGF14Q92915 247 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 SMARCD2Q92925 531 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 KHSRPQ92945 711 aaKnown RBP eCLIP23.22■■□□□ 1.31
SHMT1-203ENST00000354098 FAM149B1Q96BN6 582 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 NHEJ1Q9H9Q4 299 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-203ENST00000354098 CCL26Q9Y258 94 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 VCANP13611 3396 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 SOBPA7XYQ1 873 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 MDM4O15151 490 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 GRAP2O75791 330 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 OLFM2O95897 454 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 CKMP06732 381 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 GZMAP12544 262 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 FCARP24071 287 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 VIPR2P41587 438 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 TUBP50607 506 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 CDK17Q00537 523 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 VPS36Q86VN1 386 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 ZDHHC14Q8IZN3 488 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 PANX2Q96RD6 677 aa23.22■■□□□ 1.31
SHMT1-203ENST00000354098 SSU72P8A0A1W2PR75 194 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 GOLGA8SH3BPF8 625 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 SART1O43290 800 aaKnown RBP23.21■■□□□ 1.31
SHMT1-203ENST00000354098 FTLP02792 175 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-203ENST00000354098 RALAP11233 206 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 ZXDBP98169 803 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 GFPT1Q06210 699 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-203ENST00000354098 TJAP1Q5JTD0 557 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 C10orf120Q5SQS8 335 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 TANGO2Q6ICL3 276 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 MCOLN2Q8IZK6 566 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 PLCD3Q8N3E9 789 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 RSAD2Q8WXG1 361 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 USP13Q92995 863 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-203ENST00000354098 RSPRY1Q96DX4 576 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 NECAB3Q96P71 396 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-203ENST00000354098 RPP25Q9BUL9 199 aaKnown RBP23.21■■□□□ 1.31
SHMT1-203ENST00000354098 ABCC13Q9NSE7 274 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 ZMYM5Q9UJ78 669 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 NAALADL1Q9UQQ1 740 aa23.21■■□□□ 1.31
SHMT1-203ENST00000354098 C19orf67A6NJJ6 358 aa23.2■■□□□ 1.3
SHMT1-203ENST00000354098 RTN2O75298 545 aa23.2■■□□□ 1.3
SHMT1-203ENST00000354098 YWHAZP63104 245 aaKnown RBP23.2■■□□□ 1.3
SHMT1-203ENST00000354098 C1QBPQ07021 282 aaKnown RBP23.2■■□□□ 1.3
SHMT1-203ENST00000354098 EFHC1Q5JVL4 640 aa23.2■■□□□ 1.3
SHMT1-203ENST00000354098 ZDHHC17Q8IUH5 632 aa23.2■■□□□ 1.3
SHMT1-203ENST00000354098 GOLGA1Q92805 767 aa23.2■■□□□ 1.3
SHMT1-203ENST00000354098 DEF6Q9H4E7 631 aa23.2■■□□□ 1.3
SHMT1-203ENST00000354098 ANHXE9PGG2 379 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 MBL2P11226 248 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 NCAM1P13591 858 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 PFKLP17858 780 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 WEE1P30291 646 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ATP5C1P36542 298 aaKnown RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ZNF268Q14587 947 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 FAM102AQ5T9C2 384 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 SYPL2Q5VXT5 272 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 TOGARAM2Q6ZUX3 1019 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 RSRC2Q7L4I2 434 aaKnown RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ZNF276Q8N554 614 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 CCDC42Q96M95 316 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 LRRC3BQ96PB8 259 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 KXD1Q9BQD3 176 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 PLA2G2FQ9BZM2 168 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 NACA2Q9H009 215 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ISCUQ9H1K1 167 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 TRPV4Q9HBA0 871 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 POPDC2Q9HBU9 364 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 TDP1Q9NUW8 608 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 SMPD4Q9NXE4 827 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 NENFQ9UMX5 172 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 NUMBLQ9Y6R0 609 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 GJB6O95452 261 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 CALB1P05937 261 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ASGR2P07307 311 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 RNASE9P60153 205 aaKnown RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 SLC7A9P82251 487 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 EFEMP1Q12805 493 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 HTR4Q13639 388 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 SLC18A3Q16572 532 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ALKBH5Q6P6C2 394 aaKnown RBP23.19■■□□□ 1.3
SHMT1-203ENST00000354098 SLC26A9Q7LBE3 791 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 TTC16Q8NEE8 873 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 RIN3Q8TB24 985 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 KCNK12Q9HB15 430 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 ZFP14Q9HCL3 533 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 CD320Q9NPF0 282 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 GKN1Q9NS71 199 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 SPTLC3Q9NUV7 552 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 CPQQ9Y646 472 aa23.19■■□□□ 1.3
SHMT1-203ENST00000354098 AKR1B10O60218 316 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 RRM1P23921 792 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 CCDC122Q5T0U0 273 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 KLHDC10Q6PID8 442 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 MIB1Q86YT6 1006 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms