RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 LRRC52Q8N7C0 313 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 BANPQ8N9N5 519 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 TCP10LQ8TDR4 215 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 USP6NLQ92738 828 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 PTPN18Q99952 460 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 RNF39Q9H2S5 420 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 SSU72Q9NP77 194 aaKnown RBP16.07■□□□□ 0.16
UPF3B-202ENST00000345865 CNTN3Q9P232 1028 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 SLC45A1Q9Y2W3 748 aa16.07■□□□□ 0.16
UPF3B-202ENST00000345865 MDM4O15151 490 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 SETSIPP0DME0 302 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 TGM2P21980 687 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 ADORA2BP29275 332 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 L1CAMP32004 1257 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 YWHAZP63104 245 aaKnown RBP16.06■□□□□ 0.16
UPF3B-202ENST00000345865 SNCBQ16143 134 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 HHATQ5VTY9 493 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 ARHGAP17Q68EM7 881 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 NOTUMQ6P988 496 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 CAND1Q86VP6 1230 aaKnown RBP16.06■□□□□ 0.16
UPF3B-202ENST00000345865 GBP7Q8N8V2 638 aaPredicted RBP16.06■□□□□ 0.16
UPF3B-202ENST00000345865 BEST2Q8NFU1 509 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 ZNF75CPQ92670 426 aaPredicted RBP16.06■□□□□ 0.16
UPF3B-202ENST00000345865 SERAC1Q96JX3 654 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 PLCD4Q9BRC7 762 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 GOLGA2P5Q9HBQ8 144 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 MTMR10Q9NXD2 777 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 HESX1Q9UBX0 185 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 WDR91A4D1P6 747 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 PIRO00625 290 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 ZWINTO95229 277 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 DARSP14868 501 aaKnown RBP16.06■□□□□ 0.16
UPF3B-202ENST00000345865 GBE1Q04446 702 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 IQSEC1Q6DN90 963 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 SH2D5Q6ZV89 423 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 CCDC110Q8TBZ0 833 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 LRRC8CQ8TDW0 803 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 STK32AQ8WU08 396 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 CYTH2Q99418 400 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 TBCBQ99426 244 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 NRDE2Q9H7Z3 1164 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 SLC5A4Q9NY91 659 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 PAK5Q9P286 719 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 CHKBQ9Y259 395 aa16.06■□□□□ 0.16
UPF3B-202ENST00000345865 BCLAF3A2AJT9 711 aaKnown RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 RRN3P2A6NIE6 340 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 IGF2BP3O00425 579 aaKnown RBP eCLIP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 FAM155BO75949 473 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 LCP1P13796 627 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 NQO1P15559 274 aaKnown RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 TSHRP16473 764 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 CYP2F1P24903 491 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 GTF2A2P52657 109 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 YWHAGP61981 247 aaKnown RBP eCLIP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 SOX4Q06945 474 aaPredicted RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 FAAP100Q0VG06 881 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ASRGL1Q7L266 308 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 OTOAQ7RTW8 1153 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 UNC93AQ86WB7 457 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 SLC44A1Q8WWI5 657 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 CENPIQ92674 756 aaPredicted RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ZNF670Q9BS34 389 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 MYLK2Q9H1R3 596 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ETNK1Q9HBU6 452 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 SMIM28A0A1B0GU29 152 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 MBLAC1A4D2B0 266 aaPredicted RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 CFAP73A6NFT4 308 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 A6NJR5 290 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 CHUKO15111 745 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ATP6V1G2O95670 118 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ZBED1O96006 694 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 F2P00734 622 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ZNF200P98182 395 aaPredicted RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 PTK7Q13308 1070 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 SWT1Q5T5J6 900 aaKnown RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ANKRD23Q86SG2 305 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 PNMA8AQ86V59 439 aaPredicted RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 CCDC185Q8N715 623 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ANKRD52Q8NB46 1076 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 DNAJB3Q8WWF6 145 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 PTPRN2Q92932 1015 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 TRIM56Q9BRZ2 755 aaKnown RBP16.05■□□□□ 0.16
UPF3B-202ENST00000345865 CYLDQ9NQC7 956 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 ETNK2Q9NVF9 386 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 MFHAS1Q9Y4C4 1052 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 NR2E3Q9Y5X4 410 aa16.05■□□□□ 0.16
UPF3B-202ENST00000345865 GLTPD2A6NH11 291 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 CXorf49A8MYA2 514 aaPredicted RBP16.04■□□□□ 0.16
UPF3B-202ENST00000345865 METTL18O95568 372 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 APRTP07741 180 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 CYP2C9P11712 490 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 PTPN9P43378 593 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 CBLBQ13191 982 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 DPYSL2Q16555 572 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 FBXO47Q5MNV8 452 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 SLC26A9Q7LBE3 791 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 PLEKHH3Q7Z736 793 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 CRYBG2Q8N1P7 616 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 FBXO41Q8TF61 875 aa16.04■□□□□ 0.16
UPF3B-202ENST00000345865 C10orf82Q8WW14 230 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms