RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SFT2D3Q587I9 215 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 MROH9Q5TGP6 573 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 RNF111Q6ZNA4 994 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 SPATA31D4Q6ZUB0 917 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 POLNQ7Z5Q5 900 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 CRLF3Q8IUI8 442 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 UBR7Q8N806 425 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 EZH1Q92800 747 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 AZIN2Q96A70 460 aa23.24■■□□□ 1.31
TRIM28-202ENST00000341753 HBS1LQ9Y450 684 aaKnown RBP23.24■■□□□ 1.31
TRIM28-202ENST00000341753 RFPL1O75677 317 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 LSM8O95777 96 aaKnown RBP23.23■■□□□ 1.31
TRIM28-202ENST00000341753 SNRPAP09012 282 aaKnown RBP23.23■■□□□ 1.31
TRIM28-202ENST00000341753 STIP1P31948 543 aaKnown RBP23.23■■□□□ 1.31
TRIM28-202ENST00000341753 RAP1GAPP47736 663 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 YWHAZP63104 245 aaKnown RBP23.23■■□□□ 1.31
TRIM28-202ENST00000341753 ROR1Q01973 937 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 SH3PXD2AQ5TCZ1 1133 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 ZC3H7BQ9UGR2 993 aaKnown RBP23.23■■□□□ 1.31
TRIM28-202ENST00000341753 A0A088AWK7 358 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 H7C0C1 242 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 ASS1P00966 412 aaKnown RBP23.23■■□□□ 1.31
TRIM28-202ENST00000341753 ATP5OP48047 213 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 CDK7P50613 346 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 CNTN2Q02246 1040 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 KCNJ11Q14654 390 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 ATG16L1Q676U5 607 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 PPP1R2P3Q6NXS1 205 aa23.23■■□□□ 1.31
TRIM28-202ENST00000341753 APOC4-APOC2K7ER74 178 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 PIK3R2O00459 728 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 TOM1L1O75674 476 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 KRT37O76014 449 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 APOC2P02655 101 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 C1QAP02745 245 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 CSH1P0DML2 217 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 CSH2P0DML3 217 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 MIPP30301 263 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 SMAD1Q15797 465 aaKnown RBP23.22■■□□□ 1.31
TRIM28-202ENST00000341753 DNAL1Q4LDG9 190 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 ARHGAP22Q7Z5H3 698 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 NDUFAF2Q8N183 169 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 SLC26A7Q8TE54 656 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 NSUN6Q8TEA1 469 aaKnown RBP23.22■■□□□ 1.31
TRIM28-202ENST00000341753 PLAC1Q9HBJ0 212 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 IRAK4Q9NWZ3 460 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 MAP3K20Q9NYL2 800 aaKnown RBP23.22■■□□□ 1.31
TRIM28-202ENST00000341753 STYXL1Q9Y6J8 313 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 STK10O94804 968 aaKnown RBP23.22■■□□□ 1.31
TRIM28-202ENST00000341753 ENPEPQ07075 957 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 PEX6Q13608 980 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 CYP4F11Q9HBI6 524 aa23.22■■□□□ 1.31
TRIM28-202ENST00000341753 DMAP1Q9NPF5 467 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-202ENST00000341753 A6NJR5 290 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 IL1BP01584 269 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 PSAPP07602 524 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 GRIA2P42262 883 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 TAP1Q03518 808 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 TRMT10BQ6PF06 316 aaKnown RBP23.21■■□□□ 1.31
TRIM28-202ENST00000341753 THNSL1Q8IYQ7 743 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 OR6Y1Q8NGX8 325 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 PPP2R3CQ969Q6 453 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 GPRASP2Q96D09 838 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 CPXM1Q96SM3 734 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 NDNQ99608 321 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 SIRPGQ9P1W8 387 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 NXF1Q9UBU9 619 aaKnown RBP23.21■■□□□ 1.31
TRIM28-202ENST00000341753 PPME1Q9Y570 386 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 PYGLP06737 847 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 C16orf46Q6P387 395 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 DENND5BQ6ZUT9 1274 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 TCHPQ9BT92 498 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 S100A14Q9HCY8 104 aa23.21■■□□□ 1.31
TRIM28-202ENST00000341753 CPOXP36551 454 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 AQP4P55087 323 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 TGFB2P61812 414 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 ASPHQ12797 758 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 HIC1Q14526 733 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 CNKSR2Q8WXI2 1034 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 PEBP4Q96S96 227 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 ADAMTS6Q9UKP5 1117 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 KCNN4O15554 427 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 ITM2AO43736 263 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 PEX2P28328 305 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 RANBP1P43487 201 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 PDCD2Q16342 344 aaPredicted RBP23.2■■□□□ 1.3
TRIM28-202ENST00000341753 RSPH3Q86UC2 560 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 PPP1R14CQ8TAE6 165 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 CENPKQ9BS16 269 aa23.2■■□□□ 1.3
TRIM28-202ENST00000341753 TXNDC9O14530 226 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 APRTP07741 180 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 DYNC1I2Q13409 638 aaKnown RBP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 DHDDSQ86SQ9 333 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 NIF3L1Q9GZT8 377 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 POPDC2Q9HBU9 364 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 SOX13Q9UN79 622 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 EFR3BQ9Y2G0 817 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 MAD1L1Q9Y6D9 718 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 OR6B1O95007 311 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 ERBB2P04626 1255 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms