RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PLEKHA7Q6IQ23 1121 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 PTAR1Q7Z6K3 402 aaPredicted RBP12.38□□□□□ -0.43
USP1-201ENST00000339950 GALNT4Q8N4A0 578 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 CDKL2Q92772 493 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 MTBPQ96DY7 904 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 NSL1Q96IY1 281 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 C17orf75Q9HAS0 396 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 DOCK2Q92608 1830 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 SNRPAP09012 282 aaKnown RBP12.38□□□□□ -0.43
USP1-201ENST00000339950 ENO3P13929 434 aaPredicted RBP12.38□□□□□ -0.43
USP1-201ENST00000339950 MGAT1P26572 445 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 SERPINB5P36952 375 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 NME5P56597 212 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 ITGA9Q13797 1035 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 TTLL4Q14679 1199 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 KHDC1Q4VXA5 237 aaKnown RBP12.38□□□□□ -0.43
USP1-201ENST00000339950 C1orf127Q8N9H9 656 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 SLC7A14Q8TBB6 771 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 VCX3BQ9H321 246 aa12.38□□□□□ -0.43
USP1-201ENST00000339950 APOBEC2Q9Y235 224 aaKnown RBP12.38□□□□□ -0.43
USP1-201ENST00000339950 SRRM3A6NNA2 597 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 DFFAO00273 331 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SPTLC1O15269 473 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 ACO1P21399 889 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 GPX6P59796 221 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 MXD4Q14582 209 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 PPP1R26Q5T8A7 1209 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 SNX30Q5VWJ9 437 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 WDR75Q8IWA0 830 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 MPP5Q8N3R9 675 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 TEKT4Q8WW24 435 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 ACO2Q99798 780 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 MRIQ9BWK5 157 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CYTH4Q9UIA0 394 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 GRID1Q9ULK0 1009 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 MUTP22033 750 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CYP2F1P24903 491 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CA8P35219 290 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 PTDSS1P48651 473 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 BNIP1Q12981 228 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 RASSF3Q86WH2 238 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 WDR49Q8IV35 697 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 USP13Q92995 863 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 SLC10A4Q96EP9 437 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 TXLNGYQ9BZA5 131 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CAB39LQ9H9S4 337 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 RSAD1Q9HA92 442 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CYP4F12Q9HCS2 524 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 STOML1Q9UBI4 398 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SLC39A10Q9ULF5 831 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 WASF2Q9Y6W5 498 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 ATXN2Q99700 1313 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 ANKRD36CQ5JPF3 1778 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SPATA31C2B4DYI2 1134 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 M0QYT0 321 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 MAFGO15525 162 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CCDC22O60826 627 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 EDF1O60869 148 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 FARP2O94887 1054 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 SPATA24Q86W54 205 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SCN4BQ8IWT1 228 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 ARHGAP24Q8N264 748 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 FGD4Q96M96 766 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 PLA2G4CQ9UP65 541 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SLC12A4Q9UP95 1085 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CYP1A1P04798 512 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 MYL3P08590 195 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 CCNHP51946 323 aaPredicted RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 PLK1P53350 603 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 USP4Q13107 963 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 EMC10Q5UCC4 262 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 GRAMD1AQ96CP6 724 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SNRNP25Q9BV90 132 aaKnown RBP12.37□□□□□ -0.43
USP1-201ENST00000339950 RHBDL2Q9NX52 303 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 GTSE1Q9NYZ3 720 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 COQ4Q9Y3A0 265 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 SNX10Q9Y5X0 201 aa12.37□□□□□ -0.43
USP1-201ENST00000339950 TNRC6CQ9HCJ0 1690 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 RGL2O15211 777 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 GOT1P17174 413 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 KCNA3P22001 575 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 SLC12A2P55011 1212 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 RBP5P82980 135 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 DEUP1Q05D60 604 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 KLC1Q07866 573 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 ZNF252P-AS1Q0IIN9 211 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 ASPHQ12797 758 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 MAP7Q14244 749 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 RNASEH2BQ5TBB1 312 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 PMF1Q6P1K2 205 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 CATSPERGQ6ZRH7 1159 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 TEX9Q8N6V9 391 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 SLC2A14Q8TDB8 520 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 TMA16Q96EY4 203 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 MRPL45Q9BRJ2 306 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 DPEP3Q9H4B8 488 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 IL1RL2Q9HB29 575 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 SOWAHBA6NEL2 793 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 SCAMP3O14828 347 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 ZC3H11AO75152 810 aaKnown RBP eCLIP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms