RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SCNN1AP37088 669 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 C10orf76Q5T2E6 689 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 HECTD3Q5T447 861 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 BTBD8Q5XKL5 378 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 POTEHQ6S545 545 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 GET4Q7L5D6 327 aaPredicted RBP23.23■■□□□ 1.31
SDC3-202ENST00000339394 EDEM1Q92611 657 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 ZNF653Q96CK0 615 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 CCSER2Q9H7U1 834 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 POPDC2Q9HBU9 364 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 ASNSD1Q9NWL6 643 aa23.23■■□□□ 1.31
SDC3-202ENST00000339394 CNOT8Q9UFF9 292 aaKnown RBP23.23■■□□□ 1.31
SDC3-202ENST00000339394 TCRBV5S1A1TA0A578 114 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 TLR5O60602 858 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 HSF2BPO75031 334 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 TBX18O95935 607 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 H2AFZP0C0S5 128 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 TUBP50607 506 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 RNASE9P60153 205 aaKnown RBP23.22■■□□□ 1.31
SDC3-202ENST00000339394 ARHGAP15Q53QZ3 475 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 GPR158Q5T848 1215 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 H2AFVQ71UI9 128 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 MAB21L3Q8N8X9 362 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 FGF13Q92913 245 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 SLC46A2Q9BY10 475 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 TRPC7Q9HCX4 862 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 TMEM59LQ9UK28 342 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 NUDT5Q9UKK9 219 aa23.22■■□□□ 1.31
SDC3-202ENST00000339394 GREB1Q4ZG55 1949 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 NRDCO43847 1150 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 IPO7O95373 1038 aaKnown RBP23.21■■□□□ 1.31
SDC3-202ENST00000339394 GJB6O95452 261 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 OAS1P00973 400 aaKnown RBP23.21■■□□□ 1.31
SDC3-202ENST00000339394 RALAP11233 206 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 KRT3P12035 628 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 NCAM1P13591 858 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 MAGEA1P43355 309 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 GPC5P78333 572 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 MAMLD1Q13495 774 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 PLEKHA7Q6IQ23 1121 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 DNAJC24Q6P3W2 148 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 BEND5Q7L4P6 421 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 NPAS3Q8IXF0 933 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 ZSWIM3Q96MP5 696 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 ZNF830Q96NB3 372 aaPredicted RBP23.21■■□□□ 1.31
SDC3-202ENST00000339394 CYP2S1Q96SQ9 504 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 RNF38Q9H0F5 515 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 SLITRK6Q9H5Y7 841 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 TASP1Q9H6P5 420 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 METTL5Q9NRN9 209 aaKnown RBP23.21■■□□□ 1.31
SDC3-202ENST00000339394 PARVAQ9NVD7 372 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.21■■□□□ 1.313e-8■■■■□ 23.3
SDC3-202ENST00000339394 MYO1AQ9UBC5 1043 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 NAALADL1Q9UQQ1 740 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 REXO2Q9Y3B8 237 aaKnown RBP23.21■■□□□ 1.31
SDC3-202ENST00000339394 PCDHA13Q9Y5I0 950 aa23.21■■□□□ 1.31
SDC3-202ENST00000339394 SIGLEC16A6NMB1 481 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 CAPN9O14815 690 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 COCHO43405 550 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 DDX6P26196 483 aaKnown RBP eCLIP23.2■■□□□ 1.35e-6■■■■■ 29.6
SDC3-202ENST00000339394 SYPL2Q5VXT5 272 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 PTCRAQ6ISU1 281 aaPredicted RBP23.2■■□□□ 1.3
SDC3-202ENST00000339394 ZNF276Q8N554 614 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 ACRBPQ8NEB7 543 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 CTNNBL1Q8WYA6 563 aaPredicted RBP23.2■■□□□ 1.3
SDC3-202ENST00000339394 ARHGEF26Q96DR7 871 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 SLC2A13Q96QE2 648 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 SLC22A12Q96S37 553 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 TRIM62Q9BVG3 475 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 SELENOOQ9BVL4 669 aa23.2■■□□□ 1.3
SDC3-202ENST00000339394 SOBPA7XYQ1 873 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 TMEM253P0C7T8 217 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 HDCP19113 662 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 SMAD2Q15796 467 aaKnown RBP23.19■■□□□ 1.3
SDC3-202ENST00000339394 DCAF6Q58WW2 860 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 PPP1R15BQ5SWA1 713 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 RSRC2Q7L4I2 434 aaKnown RBP23.19■■□□□ 1.3
SDC3-202ENST00000339394 ARCQ7LC44 396 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 DEFB106AQ8N104 65 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 ARL14EPQ8N8R7 260 aaPredicted RBP23.19■■□□□ 1.3
SDC3-202ENST00000339394 DESI2Q9BSY9 194 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 KCNF1Q9H3M0 494 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 GDE1Q9NZC3 331 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 CDH7Q9ULB5 785 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 DOCK6Q96HP0 2047 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 NOTCH4Q99466 2003 aa23.19■■□□□ 1.3
SDC3-202ENST00000339394 CYP1A2P05177 515 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 RFC1P35251 1148 aaPredicted RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 ATP5C1P36542 298 aaKnown RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 FLT3P36888 993 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 RPL7AP62424 266 aaKnown RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 PUS10Q3MIT2 529 aaKnown RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 C10orf120Q5SQS8 335 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 CMTM8Q8IZV2 173 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 EMC1Q8N766 993 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 JOSD2Q8TAC2 188 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 RNF139Q8WU17 664 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 MYADMQ96S97 322 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 CDK5RAP1Q96SZ6 601 aaKnown RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 ZMYM5Q9UJ78 669 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms