RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 EML3Q32P44 896 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 SYPL2Q5VXT5 272 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 BSPRYQ5W0U4 402 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 PM20D1Q6GTS8 502 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 CCDC186Q7Z3E2 898 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 ZNF687Q8N1G0 1237 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 TTC39CQ8N584 583 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 DEPDC1BQ8WUY9 529 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 IRF7Q92985 503 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 KLF16Q9BXK1 252 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-201ENST00000311943 NACA2Q9H009 215 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 FBXO44Q9H4M3 255 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 CYLDQ9NQC7 956 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 TLR8Q9NR97 1041 aaKnown RBP12.65□□□□□ -0.38
SCFD1-201ENST00000311943 DUS2Q9NX74 493 aaKnown RBP12.65□□□□□ -0.38
SCFD1-201ENST00000311943 DLGAP2Q9P1A6 1054 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 RASAL2Q9UJF2 1139 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 NAALADL1Q9UQQ1 740 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 FRYLO94915 3013 aa12.65□□□□□ -0.38
SCFD1-201ENST00000311943 SPECC1L-ADORA2AF8WAN1 911 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 TRDMT1O14717 391 aaKnown RBP12.64□□□□□ -0.39
SCFD1-201ENST00000311943 AP5Z1O43299 807 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 ERBB2P04626 1255 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 CHRNB2P17787 502 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 SLC6A11P48066 632 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 KPNA1P52294 538 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-201ENST00000311943 JAM2P57087 298 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 STARD6P59095 220 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 RUNX3Q13761 415 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PTPN20Q4JDL3 420 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 BMP8AQ7Z5Y6 402 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 CCDC105Q8IYK2 499 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 ADGRG2Q8IZP9 1017 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PRSS33Q8NF86 280 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 ADAM33Q9BZ11 813 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PNPLA8Q9NP80 782 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 H0Y858 1186 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 GJB6O95452 261 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 DDX6P26196 483 aaKnown RBP eCLIP12.64□□□□□ -0.39
SCFD1-201ENST00000311943 CTHP32929 405 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 NUMBP49757 651 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PDCLQ13371 301 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 FKBP15Q5T1M5 1219 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 RHBDF2Q6PJF5 856 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 TSSK4Q6SA08 328 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 TMEM25Q86YD3 366 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 NAT16Q8N8M0 369 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PJA1Q8NG27 643 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 EPS8L1Q8TE68 723 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 OSCP1Q8WVF1 389 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 KCTD13Q8WZ19 329 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 FAM3CQ92520 227 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 ERLEC1Q96DZ1 483 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 CEP295NLQ96MC4 621 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PCDHB18PQ96TA0 734 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 DDX23Q9BUQ8 820 aaKnown RBP12.64□□□□□ -0.39
SCFD1-201ENST00000311943 STK33Q9BYT3 514 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 NAT10Q9H0A0 1025 aaKnown RBP12.64□□□□□ -0.39
SCFD1-201ENST00000311943 ECT2Q9H8V3 914 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 LTB4R2Q9NPC1 389 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 FAM86C1Q9NVL1 165 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 PLK2Q9NYY3 685 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 CALCOCO1Q9P1Z2 691 aa12.64□□□□□ -0.39
SCFD1-201ENST00000311943 KANSL1LA0AUZ9 987 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 STC2O76061 302 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 SETSIPP0DME0 302 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 TFE3P19532 575 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-201ENST00000311943 AOC1P19801 751 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 WEE1P30291 646 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 GJA4P35212 333 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 ATP5C1P36542 298 aaKnown RBP12.63□□□□□ -0.39
SCFD1-201ENST00000311943 FANCCQ00597 558 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 ARHGAP29Q52LW3 1261 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 RAB6CQ53S08 254 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 ASTLQ6HA08 431 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-201ENST00000311943 TPGS1Q6ZTW0 290 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 ENOSF1Q7L5Y1 443 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 SIX6OS1Q8N1H7 587 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 PDZD8Q8NEN9 1154 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 SLC30A5Q8TAD4 765 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 OLIG1Q8TAK6 271 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 CSGALNACT1Q8TDX6 532 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 CPA5Q8WXQ8 436 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 MYEOVQ96EZ4 313 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 SLC4A5Q9BY07 1137 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 RAB6CQ9H0N0 254 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 NOCTQ9UK39 431 aaKnown RBP12.63□□□□□ -0.39
SCFD1-201ENST00000311943 KIAA1257Q9ULG3 409 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 SIT1Q9Y3P8 196 aa12.63□□□□□ -0.39
SCFD1-201ENST00000311943 CACNA1IQ9P0X4 2223 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 CYP17A1P05093 508 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 TRIM21P19474 475 aaKnown RBP12.62□□□□□ -0.39
SCFD1-201ENST00000311943 PTK2Q05397 1052 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 GOLGA8FQ08AF8 430 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 GOLGA8DPQ0D2H9 430 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 TCF15Q12870 199 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 ZNF268Q14587 947 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-201ENST00000311943 NR1I3Q14994 352 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 LY6G5CQ5SRR4 150 aa12.62□□□□□ -0.39
SCFD1-201ENST00000311943 CC2D1AQ6P1N0 951 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms