RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM49BQ9NUQ9 324 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 DRG1Q9Y295 367 aaKnown RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 RAD18Q9NS91 495 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 SH3BP4Q9P0V3 963 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 TBX3O15119 743 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 TBC1D12O60347 775 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 SYNCRIPO60506 623 aaKnown RBP14.28□□□□□ -0.12
CSPG4-201ENST00000308508 MPOP05164 745 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 RAG1P15918 1043 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 GOLGA7BQ2TAP0 167 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 GNG14A0A1W2PPG7 69 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 BAIAP3O94812 1187 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 KLK7P49862 253 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 PRKAA2P54646 552 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 PDK2Q15119 407 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 MZT2AQ6P582 158 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 SLC26A11Q86WA9 606 aa14.28□□□□□ -0.12
CSPG4-201ENST00000308508 IGSF9BQ9UPX0 1349 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 KATNA1O75449 491 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 DENND5BQ6ZUT9 1274 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 STRA8Q7Z7C7 330 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 ATXN2LQ8WWM7 1075 aaKnown RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 PHF20Q9BVI0 1012 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 CHID1Q9BWS9 393 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 COPS7BQ9H9Q2 264 aaPredicted RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 CHST12Q9NRB3 414 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 DKK3Q9UBP4 350 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 GTF3C4Q9UKN8 822 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 TSPAN19P0C672 248 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 SLC2A3P11169 496 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 HPGDP15428 266 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 SLC1A6P48664 564 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 TIGD7Q6NT04 549 aaPredicted RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 MYO1HQ8N1T3 1032 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 CDC42EP4Q9H3Q1 356 aaKnown RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 ENTPD7Q9NQZ7 604 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 GSTK1Q9Y2Q3 226 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 NCAM1P13591 858 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 FCHO2Q0JRZ9 810 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 CAMK2GQ13555 558 aaPredicted RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 XKR3Q5GH77 459 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 OTUD3Q5T2D3 398 aaPredicted RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 STX12Q86Y82 276 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 RNASE11Q8TAA1 199 aaKnown RBP14.27□□□□□ -0.12
CSPG4-201ENST00000308508 KLHL28Q9NXS3 571 aa14.27□□□□□ -0.12
CSPG4-201ENST00000308508 F5H6K3 240 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 IDH3BO43837 385 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 PDGFRBP09619 1106 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 MYBP10242 640 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 GPSM2P81274 684 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 KLRC3Q07444 240 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF513Q8N8E2 541 aaPredicted RBP14.27□□□□□ -0.13
CSPG4-201ENST00000308508 INPP4BO15327 924 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 TADA2AO75478 443 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 GTF2H1P32780 548 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 ITGB3BPQ13352 177 aaPredicted RBP14.27□□□□□ -0.13
CSPG4-201ENST00000308508 CIAPIN1Q6FI81 312 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 STK32AQ8WU08 396 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 ADI1Q9BV57 179 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 NIF3L1Q9GZT8 377 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 COMMD9Q9P000 198 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 CPA3P15088 417 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 YWHAQP27348 245 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 DLG3Q92796 817 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 CDC42BPGQ6DT37 1551 aa14.27□□□□□ -0.13
CSPG4-201ENST00000308508 GUCY1B2O75343 617 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 PMPCBO75439 489 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 HLA-DRAP01903 254 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CYP2C8P10632 490 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 RCVRNP35243 200 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 IFNGR2P38484 337 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 RFC5P40937 340 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF605Q86T29 641 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 FIG4Q92562 907 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 SEPHS2Q99611 448 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 NCF1BA6NI72 391 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 NCF1CA8MVU1 366 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 NCF1P14598 390 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ILF2Q12905 390 aaKnown RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 GANQ9H2C0 597 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 EPB41L4BQ9H329 900 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 SAR1AQ9NR31 198 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CRNNQ9UBG3 495 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 FAM47E-STBD1D6RA91 191 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 HS6ST1O60243 411 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 PARNO95453 639 aaKnown RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CNPP09543 421 aaKnown RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 TPBGLP0DKB5 382 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 BGNP21810 368 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ETFBP38117 255 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CASP4P49662 377 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 PSMD4P55036 377 aaKnown RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ZDHHC13Q8IUH4 622 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF668Q96K58 619 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF512Q96ME7 567 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 NMRK2Q9NPI5 230 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 NFICP08651 508 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 GSTT1P30711 240 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 GRK3P35626 688 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 HNMTP50135 292 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms