RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.05■□□□□ 0.16
COPS3-201ENST00000268717 FNDC1Q4ZHG4 1894 aaPredicted RBP16.04■□□□□ 0.16
COPS3-201ENST00000268717 B4GALT3O60512 393 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 GAS8O95995 478 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 ITGB1P05556 798 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 MATKP42679 507 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 TNNT3P45378 269 aaPredicted RBP16.04■□□□□ 0.16
COPS3-201ENST00000268717 ERVK-21P61565 698 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 GPS2Q13227 327 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 PDK2Q15119 407 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 TAF5Q15542 800 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 CCDC142Q17RM4 750 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 PAN2Q504Q3 1202 aaKnown RBP16.04■□□□□ 0.16
COPS3-201ENST00000268717 BBS12Q6ZW61 710 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 CYP4V2Q6ZWL3 525 aaPredicted RBP16.04■□□□□ 0.16
COPS3-201ENST00000268717 ANKS1BQ7Z6G8 1248 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 GSPT2Q8IYD1 628 aaKnown RBP16.04■□□□□ 0.16
COPS3-201ENST00000268717 KRT222Q8N1A0 295 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 FAM71BQ8TC56 605 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 FAM172AQ8WUF8 416 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 NT5C3BQ969T7 300 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 CFAP57Q96MR6 1250 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 SLC2A13Q96QE2 648 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 HEMGNQ9BXL5 484 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 ZWILCHQ9H900 591 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 CHST7Q9NS84 486 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 LRFN2Q9ULH4 789 aa16.04■□□□□ 0.16
COPS3-201ENST00000268717 REV3LO60673 3130 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 PI4K2BG5E9Z4 385 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 I3L4J1 428 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 RFXAPO00287 272 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 GRAP2O75791 330 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 BEST1O76090 585 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 ARSEP51690 589 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 MAP3K7CLP57077 242 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 PTK6Q13882 451 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 C15orf59Q2T9L4 293 aaPredicted RBP16.03■□□□□ 0.16
COPS3-201ENST00000268717 SLC25A52Q3SY17 297 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 C4orf50Q6ZRC1 276 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 SND1Q7KZF4 910 aaKnown RBP eCLIP16.03■□□□□ 0.16
COPS3-201ENST00000268717 BNIPLQ7Z465 357 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 PSTKQ8IV42 348 aaKnown RBP16.03■□□□□ 0.16
COPS3-201ENST00000268717 MAP7D3Q8IWC1 876 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 ZMIZ2Q8NF64 920 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 CCHCR1Q8TD31 782 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 C1orf54Q8WWF1 131 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 IRGQQ8WZA9 623 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 ZNF689Q96CS4 500 aaPredicted RBP16.03■□□□□ 0.16
COPS3-201ENST00000268717 TRIM51Q9BSJ1 452 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 DMAP1Q9NPF5 467 aaPredicted RBP16.03■□□□□ 0.16
COPS3-201ENST00000268717 KLHL11Q9NVR0 708 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 RRN3Q9NYV6 651 aa16.03■□□□□ 0.16
COPS3-201ENST00000268717 DRG1Q9Y295 367 aaKnown RBP16.03■□□□□ 0.16
COPS3-201ENST00000268717 KIAA1671Q9BY89 1806 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 HHLA1C9JL84 531 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 DAPK3O43293 454 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 DGKIO75912 1065 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 IGFBP4P22692 258 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 NOS2P35228 1153 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 OR1G1P47890 313 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 HDAC4P56524 1084 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 YWHAZP63104 245 aaKnown RBP16.02■□□□□ 0.16
COPS3-201ENST00000268717 ELAVL2Q12926 359 aaKnown RBP16.02■□□□□ 0.16
COPS3-201ENST00000268717 HLTFQ14527 1009 aaKnown RBP eCLIP16.02■□□□□ 0.16
COPS3-201ENST00000268717 KCTD6Q8NC69 237 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 OR10T2Q8NGX3 314 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 HASPINQ8TF76 798 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 CLEC4CQ8WTT0 213 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 NKD2Q969F2 451 aaPredicted RBP16.02■□□□□ 0.16
COPS3-201ENST00000268717 PEBP4Q96S96 227 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 C17orf80Q9BSJ5 609 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 COLEC11Q9BWP8 271 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 OXCT2Q9BYC2 517 aaPredicted RBP16.02■□□□□ 0.16
COPS3-201ENST00000268717 POPDC2Q9HBU9 364 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 PCSK1NQ9UHG2 260 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 STAP1Q9ULZ2 295 aa16.02■□□□□ 0.16
COPS3-201ENST00000268717 R3HDM2Q9Y2K5 976 aaKnown RBP16.02■□□□□ 0.16
COPS3-201ENST00000268717 F8W810 466 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 LIASO43766 372 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 HSPA9P38646 679 aaKnown RBP16.01■□□□□ 0.15
COPS3-201ENST00000268717 TKTL1P51854 596 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 DAOAP59103 153 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 TFDP2Q14188 446 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 SMTNL2Q2TAL5 461 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 KCNT1Q5JUK3 1230 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 SPDYCQ5MJ68 293 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 SH3PXD2AQ5TCZ1 1133 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 BEND5Q7L4P6 421 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 DCP1BQ8IZD4 617 aaKnown RBP16.01■□□□□ 0.15
COPS3-201ENST00000268717 LRRC45Q96CN5 670 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 FUBP3Q96I24 572 aaKnown RBP eCLIP16.01■□□□□ 0.15
COPS3-201ENST00000268717 HINFPQ9BQA5 517 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 TRIM62Q9BVG3 475 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 NRDE2Q9H7Z3 1164 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 PRDM16Q9HAZ2 1276 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 NGRNQ9NPE2 291 aaKnown RBP16.01■□□□□ 0.15
COPS3-201ENST00000268717 ADAM28Q9UKQ2 775 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 HPCAL4Q9UM19 191 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 APOC4-APOC2K7ER74 178 aa16.01■□□□□ 0.15
COPS3-201ENST00000268717 LPXNO60711 386 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms