RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 INTS6LQ5JSJ4 861 aaKnown RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 XYLT1Q86Y38 959 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 FIBCD1Q8N539 461 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ADAM32Q8TC27 787 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 RPRD1AQ96P16 312 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 CDK5RAP1Q96SZ6 601 aaKnown RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 TRIM7Q9C029 511 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 VRTNQ9H8Y1 702 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 VIPAS39Q9H9C1 493 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ABCC13Q9NSE7 274 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 SAGE1Q9NXZ1 904 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 PCDHB8Q9UN66 801 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 NEU2Q9Y3R4 380 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 A0A087WUV0 522 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 MAP3K6O95382 1288 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 CYBBP04839 570 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 GLI1P08151 1106 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 HOXD8P13378 290 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 KDELR1P24390 212 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 KPNA1P52294 538 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 GNGT1P63211 74 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 TIGD5Q53EQ6 642 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 TRMT10CQ7L0Y3 403 aaKnown RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ITIH5Q86UX2 942 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ZMAT2Q96NC0 199 aaKnown RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 KATNBL1Q9H079 304 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 DPEP3Q9H4B8 488 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 C11orf49Q9H6J7 331 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 SH3BP1Q9Y3L3 701 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 LMO2P25791 158 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 GGCXP38435 758 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 CTCFP49711 727 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 ZBTB16Q05516 673 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 PSMD5Q16401 504 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 HP1BP3Q5SSJ5 553 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-201ENST00000254950 SPPL2BQ8TCT7 592 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 RSPH1Q8WYR4 309 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 TWNKQ96RR1 684 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 HTATIP2Q9BUP3 242 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 CAPS2Q9BXY5 557 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 CCDC68Q9H2F9 335 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 CYLDQ9NQC7 956 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 GDAP2Q9NXN4 497 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 HMGXB4Q9UGU5 601 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 RSPH14Q9UHP6 348 aa12.04□□□□□ -0.48
VPS4A-201ENST00000254950 SYN3O14994 580 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 TRUB2O95900 331 aaKnown RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 MT-ND3P03897 115 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 IRF1P10914 325 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 H2AFXP16104 143 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 MATKP42679 507 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 TAS2R40P59535 323 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 THOC5Q13769 683 aaKnown RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 KLHL38Q2WGJ6 581 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 SMYD5Q6GMV2 418 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 PMF1Q6P1K2 205 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 CRYBG2Q8N1P7 616 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 USP6NLQ92738 828 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 B3GNT5Q9BYG0 378 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 ANKZF1Q9H8Y5 726 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 MRPL17Q9NRX2 175 aaKnown RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 NR2E3Q9Y5X4 410 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 FAM155AB1AL88 458 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 ADAMTS4O75173 837 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 ATP2C2O75185 946 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 CHRNA1P02708 482 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 LAG3P18627 525 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 TGM2P21980 687 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 XPAP23025 273 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 TBX4P57082 545 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 SMARCB1Q12824 385 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 ATP13A4Q4VNC1 1196 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 RNF219Q5W0B1 726 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 VSTM1Q6UX27 236 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 INTS9Q9NV88 658 aaKnown RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 EDN1P05305 212 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 CKMP06732 381 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 CLTBP09497 229 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 LRPAP1P30533 357 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 ARL1P40616 181 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 ZNF135P52742 658 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 WNT7BP56706 349 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 AADACL2Q6P093 401 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 FUT10Q6P4F1 479 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 PPIL6Q8IXY8 311 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 PABPC5Q96DU9 382 aaKnown RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 C9orf72Q96LT7 481 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 AGAP3Q96P47 875 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 TMEM121Q9BTD3 319 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 FRMD8Q9BZ67 464 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-201ENST00000254950 TBC1D13Q9NVG8 400 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 SPG21Q9NZD8 308 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 SCN4AP35499 1836 aa12.03□□□□□ -0.48
VPS4A-201ENST00000254950 MYBPHLA2RUH7 354 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 C3orf70A6NLC5 250 aaPredicted RBP12.02□□□□□ -0.48
VPS4A-201ENST00000254950 DAB1O75553 588 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 NR1D1P20393 614 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 INCA1Q0VD86 236 aa12.02□□□□□ -0.48
VPS4A-201ENST00000254950 PKN2Q16513 984 aaKnown RBP12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms