RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YCR108CQ3E819 63 aa2.21□□□□□ -2.06
DEF1YKL054C SMX2P40204 77 aaKnown RBP2.2□□□□□ -2.06
DEF1YKL054C TAO3P40468 2376 aa2.19□□□□□ -2.06
DEF1YKL054C YGR146C-AQ8TGT9 53 aa2.1□□□□□ -2.07
DEF1YKL054C RPS29BP41058 56 aaKnown RBP2.07□□□□□ -2.08
DEF1YKL054C BUD3P25558 1636 aa2.07□□□□□ -2.08
DEF1YKL054C HIR3P47171 1648 aa2.07□□□□□ -2.08
DEF1YKL054C TOS6P48560 102 aa2.04□□□□□ -2.08
DEF1YKL054C CHC1P22137 1653 aaKnown RBP2.04□□□□□ -2.08
DEF1YKL054C FIG2P25653 1609 aa2.03□□□□□ -2.08
DEF1YKL054C ATG2P53855 1592 aa2.03□□□□□ -2.08
DEF1YKL054C YOR008C-AQ3E7B9 74 aa2.02□□□□□ -2.09
DEF1YKL054C NUM1Q00402 2748 aa2.01□□□□□ -2.09
DEF1YKL054C MLP2P40457 1679 aa2.01□□□□□ -2.09
DEF1YKL054C YLL006W-AQ3E814 58 aa1.86□□□□□ -2.11
DEF1YKL054C YPR117WQ06116 2489 aa1.85□□□□□ -2.11
DEF1YKL054C YLR342W-AQ3E810 57 aa1.82□□□□□ -2.12
DEF1YKL054C YJL133C-AQ3E7A3 74 aa1.78□□□□□ -2.12
DEF1YKL054C GCN2P15442 1659 aa1.78□□□□□ -2.12
DEF1YKL054C YGL258W-AQ3E740 77 aa1.76□□□□□ -2.13
DEF1YKL054C CUP1-1P0CX80 61 aa1.75□□□□□ -2.13
DEF1YKL054C CUP1-2P0CX81 61 aa1.75□□□□□ -2.13
DEF1YKL054C UTP20P35194 2493 aaKnown RBP1.72□□□□□ -2.13
DEF1YKL054C YOR072W-BQ3E832 53 aa1.71□□□□□ -2.14
DEF1YKL054C COA2Q3E823 68 aa1.67□□□□□ -2.14
DEF1YKL054C TOR1P35169 2470 aa1.66□□□□□ -2.14
DEF1YKL054C YDR524C-BQ3E6R4 66 aa1.66□□□□□ -2.14
DEF1YKL054C COX9P07255 59 aa1.64□□□□□ -2.15
DEF1YKL054C YBR056W-AI2HB52 66 aa1.63□□□□□ -2.15
DEF1YKL054C DDR2P89113 61 aa1.61□□□□□ -2.15
DEF1YKL054C YOR316C-AQ3E806 69 aa1.61□□□□□ -2.15
DEF1YKL054C TOM7P53507 60 aa1.53□□□□□ -2.16
DEF1YKL054C MDN1Q12019 4910 aaKnown RBP1.51□□□□□ -2.17
DEF1YKL054C RPS29AP41057 56 aaKnown RBP1.5□□□□□ -2.17
DEF1YKL054C FLO1P32768 1537 aa1.42□□□□□ -2.18
DEF1YKL054C YJL127C-BQ3E828 52 aa1.42□□□□□ -2.18
DEF1YKL054C YDR034C-AP0C289 58 aa1.41□□□□□ -2.18
DEF1YKL054C GCN1P33892 2672 aaKnown RBP1.33□□□□□ -2.2
DEF1YKL054C RPL29P05747 59 aaPredicted RBP1.32□□□□□ -2.2
DEF1YKL054C FMP27Q06179 2628 aa1.26□□□□□ -2.21
DEF1YKL054C YHR073W-AP0C5N7 58 aa1.22□□□□□ -2.21
DEF1YKL054C TOR2P32600 2474 aaKnown RBP1.21□□□□□ -2.22
DEF1YKL054C MEC1P38111 2368 aa1.2□□□□□ -2.22
DEF1YKL054C YHR050W-AQ05451 56 aa1.15□□□□□ -2.23
DEF1YKL054C TRA1P38811 3744 aa1.05□□□□□ -2.24
DEF1YKL054C CSF1Q12150 2958 aa1.01□□□□□ -2.25
DEF1YKL054C TEL1P38110 2787 aa1□□□□□ -2.25
DEF1YKL054C PMP3P87284 55 aa0.98□□□□□ -2.25
DEF1YKL054C Q0017Q9ZZX8 53 aa0.95□□□□□ -2.26
DEF1YKL054C YML054C-AQ3E809 52 aa0.93□□□□□ -2.26
DEF1YKL054C HOR7Q05827 59 aa0.88□□□□□ -2.27
DEF1YKL054C IRA1P18963 3092 aa0.77□□□□□ -2.29
DEF1YKL054C NCE101Q02820 53 aa0.77□□□□□ -2.29
DEF1YKL054C DYN1P36022 4092 aa0.7□□□□□ -2.3
DEF1YKL054C IRA2P19158 3079 aa0.68□□□□□ -2.3
DEF1YKL054C VPS13Q07878 3144 aa0.62□□□□□ -2.31
DEF1YKL054C TOM1Q03280 3268 aa0.53□□□□□ -2.32
DEF1YKL054C YDR034W-BQ6Q5X2 51 aa0.51□□□□□ -2.33
DEF1YKL054C YLL066W-BQ8TGJ7 56 aa0.28□□□□□ -2.36
DEF1YKL054C YMR105W-AQ8TGS8 64 aa0.24□□□□□ -2.37
DEF1YKL054C RPL39P04650 51 aa0.11□□□□□ -2.39
DEF1YKL054C YIL046W-AQ3E7Z4 54 aa-0.36□□□□□ -2.47
DEF1YKL054C Q0297Q9ZZV8 51 aa-0.68□□□□□ -2.52
Retrieved 63 of 5,963 RNA–protein pairs in 30 ms