RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	NUP192	P47054	1683 aa		1.04	□□□□□ -2.24
VMA22	YHR060W	RKR1	Q04781	1562 aa		1.03	□□□□□ -2.24
VMA22	YHR060W	SEN1	Q00416	2231 aa	Known RBP	1.02	□□□□□ -2.25
VMA22	YHR060W	BUD3	P25558	1636 aa		1	□□□□□ -2.25
VMA22	YHR060W	RPS29A	P41057	56 aa	Known RBP	1	□□□□□ -2.25
VMA22	YHR060W	HIR3	P47171	1648 aa		0.99	□□□□□ -2.25
VMA22	YHR060W	YDR524C-B	Q3E6R4	66 aa		0.98	□□□□□ -2.25
VMA22	YHR060W	NUP170	P38181	1502 aa		0.96	□□□□□ -2.26
VMA22	YHR060W	YPR010C-A	A5Z2X5	72 aa		0.96	□□□□□ -2.26
VMA22	YHR060W	STU1	P38198	1513 aa		0.93	□□□□□ -2.26
VMA22	YHR060W	YGL258W-A	Q3E740	77 aa		0.88	□□□□□ -2.27
VMA22	YHR060W	YLL006W-A	Q3E814	58 aa		0.87	□□□□□ -2.27
VMA22	YHR060W	YOR072W-B	Q3E832	53 aa		0.86	□□□□□ -2.27
VMA22	YHR060W	TAO3	P40468	2376 aa		0.86	□□□□□ -2.27
VMA22	YHR060W	MLP2	P40457	1679 aa		0.84	□□□□□ -2.27
VMA22	YHR060W	ATG2	P53855	1592 aa		0.82	□□□□□ -2.28
VMA22	YHR060W	FIG2	P25653	1609 aa		0.82	□□□□□ -2.28
VMA22	YHR060W	CHC1	P22137	1653 aa	Known RBP	0.78	□□□□□ -2.29
VMA22	YHR060W	GCN2	P15442	1659 aa		0.75	□□□□□ -2.29
VMA22	YHR060W	COX9	P07255	59 aa		0.7	□□□□□ -2.3
VMA22	YHR060W	SMX2	P40204	77 aa	Known RBP	0.67	□□□□□ -2.3
VMA22	YHR060W	YOR316C-A	Q3E806	69 aa		0.67	□□□□□ -2.3
VMA22	YHR060W	DDR2	P89113	61 aa		0.63	□□□□□ -2.31
VMA22	YHR060W	YLR342W-A	Q3E810	57 aa		0.63	□□□□□ -2.31
VMA22	YHR060W	FLO1	P32768	1537 aa		0.61	□□□□□ -2.31
VMA22	YHR060W	YJL133C-A	Q3E7A3	74 aa		0.61	□□□□□ -2.31
VMA22	YHR060W	YHR050W-A	Q05451	56 aa		0.56	□□□□□ -2.32
VMA22	YHR060W	YDR034C-A	P0C289	58 aa		0.51	□□□□□ -2.33
VMA22	YHR060W	UTP20	P35194	2493 aa	Known RBP	0.51	□□□□□ -2.33
VMA22	YHR060W	RPL29	P05747	59 aa	Predicted RBP	0.49	□□□□□ -2.33
VMA22	YHR060W	YHR073W-A	P0C5N7	58 aa		0.47	□□□□□ -2.33
VMA22	YHR060W	TOR1	P35169	2470 aa		0.46	□□□□□ -2.34
VMA22	YHR060W	YJL127C-B	Q3E828	52 aa		0.44	□□□□□ -2.34
VMA22	YHR060W	YML054C-A	Q3E809	52 aa		0.35	□□□□□ -2.35
VMA22	YHR060W	Q0017	Q9ZZX8	53 aa		0.35	□□□□□ -2.35
VMA22	YHR060W	TOM7	P53507	60 aa		0.34	□□□□□ -2.36
VMA22	YHR060W	PMP3	P87284	55 aa		0.28	□□□□□ -2.36
VMA22	YHR060W	HOR7	Q05827	59 aa		0.27	□□□□□ -2.37
VMA22	YHR060W	TOR2	P32600	2474 aa	Known RBP	0.26	□□□□□ -2.37
VMA22	YHR060W	FMP27	Q06179	2628 aa		0.26	□□□□□ -2.37
VMA22	YHR060W	DYN1	P36022	4092 aa		0.21	□□□□□ -2.38
VMA22	YHR060W	MEC1	P38111	2368 aa		0.14	□□□□□ -2.39
VMA22	YHR060W	YPR117W	Q06116	2489 aa		0.14	□□□□□ -2.39
VMA22	YHR060W	GCN1	P33892	2672 aa	Known RBP	0.1	□□□□□ -2.39
VMA22	YHR060W	TEL1	P38110	2787 aa		0.06	□□□□□ -2.4
VMA22	YHR060W	NCE101	Q02820	53 aa		0.06	□□□□□ -2.4
VMA22	YHR060W	CSF1	Q12150	2958 aa		0.04	□□□□□ -2.4
VMA22	YHR060W	YMR105W-A	Q8TGS8	64 aa		0.03	□□□□□ -2.4
VMA22	YHR060W	TRA1	P38811	3744 aa		0.02	□□□□□ -2.41
VMA22	YHR060W	YBR056W-A	I2HB52	66 aa		0.01	□□□□□ -2.41
VMA22	YHR060W	IRA1	P18963	3092 aa		0	□□□□□ -2.41
VMA22	YHR060W	CUP1-1	P0CX80	61 aa		0	□□□□□ -2.41
VMA22	YHR060W	CUP1-2	P0CX81	61 aa		0	□□□□□ -2.41
VMA22	YHR060W	YLL066W-B	Q8TGJ7	56 aa		-0.08	□□□□□ -2.42
VMA22	YHR060W	NUM1	Q00402	2748 aa		-0.14	□□□□□ -2.43
VMA22	YHR060W	MDN1	Q12019	4910 aa	Known RBP	-0.2	□□□□□ -2.44
VMA22	YHR060W	IRA2	P19158	3079 aa		-0.22	□□□□□ -2.45
VMA22	YHR060W	VPS13	Q07878	3144 aa		-0.24	□□□□□ -2.45
VMA22	YHR060W	RPL39	P04650	51 aa		-0.4	□□□□□ -2.47
VMA22	YHR060W	YIL046W-A	Q3E7Z4	54 aa		-0.68	□□□□□ -2.52
VMA22	YHR060W	TOM1	Q03280	3268 aa		-0.71	□□□□□ -2.52
VMA22	YHR060W	Q0297	Q9ZZV8	51 aa		-0.89	□□□□□ -2.55
VMA22	YHR060W	YDR034W-B	Q6Q5X2	51 aa		-1.85	□□□□□ -2.71

Retrieved 63 of 5,963 RNA–protein pairs in 130.6 ms