RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PDGFRAP16234 1089 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 PAX3P23760 479 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 STIP1P31948 543 aaKnown RBP19.19■□□□□ 0.66
CLN3-263ENST00000637871 LSP1P33241 339 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 BCAT1P54687 386 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 BST2Q10589 180 aaKnown RBP19.19■□□□□ 0.66
CLN3-263ENST00000637871 IKBKEQ14164 716 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 LLGL1Q15334 1064 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 TNFAIP8L3Q5GJ75 292 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 ARFGAP1Q8N6T3 406 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 APPL2Q8NEU8 664 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 BCAS4Q8TDM0 211 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 MRPL45Q9BRJ2 306 aaKnown RBP19.19■□□□□ 0.66
CLN3-263ENST00000637871 MAK16Q9BXY0 300 aaKnown RBP19.19■□□□□ 0.66
CLN3-263ENST00000637871 NXF3Q9H4D5 531 aaKnown RBP19.19■□□□□ 0.66
CLN3-263ENST00000637871 AAASQ9NRG9 546 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 SLC12A6Q9UHW9 1150 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 HES2Q9Y543 173 aa19.19■□□□□ 0.66
CLN3-263ENST00000637871 A8MXQ7 604 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 APOC4-APOC2K7ER74 178 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 ENPP3O14638 875 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 PRPSAP2O60256 369 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 APOC2P02655 101 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 GNL1P36915 607 aaPredicted RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 ATP1A2P50993 1020 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 MAGOHP61326 146 aaKnown RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 WDR5P61964 334 aaKnown RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 STAT4Q14765 748 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 SHHQ15465 462 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 SOWAHAQ2M3V2 549 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 DNAJC21Q5F1R6 531 aaKnown RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 PPP1R26Q5T8A7 1209 aaPredicted RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 CHRDL2Q6WN34 429 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 B4GALNT4Q76KP1 1039 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 ANKS1BQ7Z6G8 1248 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 CCDC25Q86WR0 208 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 RIBC1Q8N443 379 aaPredicted RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 RXFP2Q8WXD0 754 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 TSPYL2Q9H2G4 693 aaPredicted RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 ZWILCHQ9H900 591 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 TUBGCP4Q9UGJ1 667 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 MEIS3P2A8K0S8 358 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 E5RJQ4 531 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 CST8O60676 142 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 HUS1O60921 280 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 WARSP23381 471 aaKnown RBP19.18■□□□□ 0.66
CLN3-263ENST00000637871 PTPN9P43378 593 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 SLC8A3P57103 927 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 PLCB3Q01970 1234 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 ORC1Q13415 861 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 FAM117BQ6P1L5 589 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 FAM183BPQ6ZVS7 135 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 ACOT1Q86TX2 421 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 RNF169Q8NCN4 708 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 RGS18Q9NS28 235 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 IPPQ9Y573 584 aa19.18■□□□□ 0.66
CLN3-263ENST00000637871 IL1R2P27930 398 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 SDC4P31431 198 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 HPDP32754 393 aaPredicted RBP19.17■□□□□ 0.66
CLN3-263ENST00000637871 ARSEP51690 589 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 P3H1Q32P28 736 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 TXNRD3NBQ6F5E7 133 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 EMC1Q8N766 993 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 LPPQ93052 612 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 C18orf25Q96B23 403 aaPredicted RBP19.17■□□□□ 0.66
CLN3-263ENST00000637871 CFAP57Q96MR6 1250 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 APOL6Q9BWW8 343 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 FTHL17Q9BXU8 183 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 KLHL11Q9NVR0 708 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 TJP2Q9UDY2 1190 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 GGA2Q9UJY4 613 aa19.17■□□□□ 0.66
CLN3-263ENST00000637871 ABHD14A-ACY1A0A1B0GW23 586 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 C9IYK1 514 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 EBAG9O00559 213 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 UPP2O95045 317 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 SHBGP04278 402 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 TRIP13Q15645 432 aaPredicted RBP19.16■□□□□ 0.66
CLN3-263ENST00000637871 OLFML1Q6UWY5 402 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 C4orf22Q6V702 233 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 SLC26A9Q7LBE3 791 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 TTC30AQ86WT1 665 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 RFX6Q8HWS3 928 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 HERVK_113Q902F9 699 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 FAM105AQ9NUU6 356 aa19.16■□□□□ 0.66
CLN3-263ENST00000637871 CFAP69A5D8W1 941 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 SGK1O00141 431 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 MCF2LO15068 1137 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 MDM4O15151 490 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 BAIAP3O94812 1187 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 MMP13P45452 471 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 GATMP50440 423 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 OTUD4Q01804 1114 aaKnown RBP19.15■□□□□ 0.66
CLN3-263ENST00000637871 EFHC1Q5JVL4 640 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 FAM109BQ6ICB4 259 aaPredicted RBP19.15■□□□□ 0.66
CLN3-263ENST00000637871 PMF1Q6P1K2 205 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 MICALCLQ6ZW33 695 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 C12orf29Q8N999 325 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 SMG8Q8ND04 991 aaKnown RBP19.15■□□□□ 0.66
CLN3-263ENST00000637871 SPATA18Q8TC71 538 aa19.15■□□□□ 0.66
CLN3-263ENST00000637871 ACTL9Q8TC94 416 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms