RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 GDI1P31150 447 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 SOX5P35711 763 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 STAT1P42224 750 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 PGFP49763 221 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 MAPK8IP2Q13387 824 aaPredicted RBP10.39□□□□□ -0.75
CLN3-261ENST00000637686 CNGA2Q16280 664 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 IER5LQ5T953 404 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 SFMBT2Q5VUG0 894 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 LCLAT1Q6UWP7 414 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 HFE2Q6ZVN8 426 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 YAF2Q8IY57 180 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 FAM71AQ8IYT1 594 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 SIX5Q8N196 739 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 CELF5Q8N6W0 485 aaKnown RBP10.39□□□□□ -0.75
CLN3-261ENST00000637686 PDZD8Q8NEN9 1154 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 DEPDC1BQ8WUY9 529 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 OVCA2Q8WZ82 227 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 TRIM44Q96DX7 344 aaPredicted RBP10.39□□□□□ -0.75
CLN3-261ENST00000637686 UBXN6Q9BZV1 441 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 FBXO44Q9H4M3 255 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 BRD9Q9H8M2 597 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 TDP1Q9NUW8 608 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 OBP2AQ9NY56 170 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 WNT16Q9UBV4 365 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 HESX1Q9UBX0 185 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 SCML2Q9UQR0 700 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 CCL26Q9Y258 94 aa10.39□□□□□ -0.75
CLN3-261ENST00000637686 NUP210Q8TEM1 1887 aaPredicted RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 KRBA1A5PL33 1030 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 LRRC53A6NM62 1247 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 TULP2O00295 520 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 ZNF263O14978 683 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 CYP26A1O43174 497 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 SERPING1P05155 500 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 PFKLP17858 780 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 USP8P40818 1118 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 PDE6CP51160 858 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 KIF11P52732 1056 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 BCAT1P54687 386 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 ADKP55263 362 aaKnown RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 SLC8A3P57103 927 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 BPIFB4P59827 614 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 PFKPQ01813 784 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 PDE4CQ08493 712 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 BST2Q10589 180 aaKnown RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 ZNF268Q14587 947 aaPredicted RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 DRAP1Q14919 205 aaPredicted RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 PKDCCQ504Y2 493 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 SLC44A4Q53GD3 710 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 SNX30Q5VWJ9 437 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 BMP8AQ7Z5Y6 402 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 PIGZQ86VD9 579 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 TMEM139Q8IV31 216 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 CCDC170Q8IYT3 715 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 TTC16Q8NEE8 873 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 RIN3Q8TB24 985 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 BPIFB1Q8TDL5 484 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 ZFYVE19Q96K21 471 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 BAG1Q99933 345 aaPredicted RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 RNF38Q9H0F5 515 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 ACP6Q9NPH0 428 aa10.38□□□□□ -0.75
CLN3-261ENST00000637686 TLR8Q9NR97 1041 aaKnown RBP10.38□□□□□ -0.75
CLN3-261ENST00000637686 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLN3-261ENST00000637686 PATJQ8NI35 1801 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 A0A1W2PQH9 124 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 M0QYV0 167 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 FOXN3O00409 490 aaPredicted RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 STK25O00506 426 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 XPO1O14980 1071 aaKnown RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 COCHO43405 550 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 OAS1P00973 400 aaKnown RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 ZDHHC11BP0C7U3 371 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 PNMA6AP0CW24 399 aaPredicted RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 GNA15P30679 374 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 TKTL1P51854 596 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 SLC7A9P82251 487 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 CCZ1BP86790 482 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 CCZ1P86791 482 aaPredicted RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 ZXDBP98169 803 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 FCHO2Q0JRZ9 810 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 RAPGEF1Q13905 1077 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 STILQ15468 1287 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 ASIC2Q16515 512 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 RAB41Q5JT25 222 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 HECTD3Q5T447 861 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 WDR59Q6PJI9 974 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 IRF2BP2Q7Z5L9 587 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 ZNF677Q86XU0 584 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 SH3RF2Q8TEC5 729 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 SLC35F5Q8WV83 523 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 CPLX3Q8WVH0 158 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 ZNF606Q8WXB4 792 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 IRF7Q92985 503 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 SECISBP2LQ93073 1101 aaKnown RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 MFSD1Q9H3U5 465 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 CCSER2Q9H7U1 834 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 KIF9Q9HAQ2 790 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 NMUR1Q9HB89 426 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 LRRC4Q9HBW1 653 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 NLRC4Q9NPP4 1024 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms