RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HFE2Q6ZVN8 426 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 DCP1BQ8IZD4 617 aaKnown RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 CMASQ8NFW8 434 aaPredicted RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 TOP1MTQ969P6 601 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 CWH43Q9H720 699 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 CHST7Q9NS84 486 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 PCYOX1Q9UHG3 505 aa17.64■□□□□ 0.41
CLN3-252ENST00000636907 R3HDM2Q9Y2K5 976 aaKnown RBP17.64■□□□□ 0.41
CLN3-252ENST00000636907 CD48P09326 243 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 CYP2F1P24903 491 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 FNTAP49354 379 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 ATXN1P54253 815 aaKnown RBP17.63■□□□□ 0.41
CLN3-252ENST00000636907 DEFB103AP81534 67 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 ELAVL2Q12926 359 aaKnown RBP17.63■□□□□ 0.41
CLN3-252ENST00000636907 TRADDQ15628 312 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 ZNF280DQ6N043 979 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 TMCO2Q7Z6W1 182 aaPredicted RBP17.63■□□□□ 0.41
CLN3-252ENST00000636907 KCTD6Q8NC69 237 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 ATG4AQ8WYN0 398 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 TBCBQ99426 244 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 TRIM51Q9BSJ1 452 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 DCLK3Q9C098 648 aa17.63■□□□□ 0.41
CLN3-252ENST00000636907 YJEFN3A6XGL0 299 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 E7ENQ6 273 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 ZBED1O96006 694 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 AMHP03971 560 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 KCNJ1P48048 391 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 CARSP49589 748 aaKnown RBP17.62■□□□□ 0.41
CLN3-252ENST00000636907 SULT1E1P49888 294 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 SNX1Q13596 522 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 TAZQ16635 292 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 DCAF6Q58WW2 860 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 RTP2Q5QGT7 225 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 TAS1R1Q7RTX1 841 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 JAMLQ86YT9 394 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 SLC2A13Q96QE2 648 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 NCAPGQ9BPX3 1015 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 POPDC2Q9HBU9 364 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 PNPLA8Q9NP80 782 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.62■□□□□ 0.41
CLN3-252ENST00000636907 ABI2Q9NYB9 513 aaPredicted RBP17.62■□□□□ 0.41
CLN3-252ENST00000636907 CALCOCO1Q9P1Z2 691 aa17.62■□□□□ 0.41
CLN3-252ENST00000636907 FAM187AA6NFU0 413 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 TJP3O95049 919 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 FYNP06241 537 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 ACRP10323 421 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 NOS2P35228 1153 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 GRIK1P39086 918 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 ARSEP51690 589 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 WDR5P61964 334 aaKnown RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 NFE2Q16621 373 aaPredicted RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 SLC25A52Q3SY17 297 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 MAP9Q49MG5 647 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 BOLA3Q53S33 107 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 OTUD1Q5VV17 481 aaPredicted RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 SYPL2Q5VXT5 272 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 FAM117BQ6P1L5 589 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 STRADAQ7RTN6 431 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 BHLHA9Q7RTU4 235 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 CCDC105Q8IYK2 499 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 TMEM199Q8N511 208 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 AENQ8WTP8 325 aaKnown RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 IFT81Q8WYA0 676 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 ZNF689Q96CS4 500 aaPredicted RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 RUNDC3BQ96NL0 473 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 FAM118BQ9BPY3 351 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 GPATCH2LQ9NWQ4 482 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 NAALADL1Q9UQQ1 740 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 PATJQ8NI35 1801 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 OR6C75A6NL08 312 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 ENDOD1O94919 500 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 ALDH7A1P49419 539 aaKnown RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 CDH6P55285 790 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 PITX1P78337 314 aaPredicted RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 PM20D1Q6GTS8 502 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 TEKT4Q8WW24 435 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 SEC14L1Q92503 715 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 NT5C3BQ969T7 300 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 NPY6RQ99463 290 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 SNRNP25Q9BV90 132 aaKnown RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 NFU1Q9UMS0 254 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 UTP11Q9Y3A2 253 aaKnown RBP17.61■□□□□ 0.41
CLN3-252ENST00000636907 USP3Q9Y6I4 520 aa17.61■□□□□ 0.41
CLN3-252ENST00000636907 TBC1D4O60343 1298 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 EFEMP2O95967 443 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 CCNG2Q16589 344 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 CA9Q16790 459 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 ZC3H12AQ5D1E8 599 aaKnown RBP17.6■□□□□ 0.41
CLN3-252ENST00000636907 RSPO2Q6UXX9 243 aaPredicted RBP17.6■□□□□ 0.41
CLN3-252ENST00000636907 BNIPLQ7Z465 357 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 MTERF4Q7Z6M4 381 aaKnown RBP17.6■□□□□ 0.41
CLN3-252ENST00000636907 DDX42Q86XP3 938 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-252ENST00000636907 SCN4BQ8IWT1 228 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 SCAMP5Q8TAC9 235 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 IRGQQ8WZA9 623 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 FUBP3Q96I24 572 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-252ENST00000636907 PGLYRP2Q96PD5 576 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 ERP44Q9BS26 406 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 TTPALQ9BTX7 342 aa17.6■□□□□ 0.41
CLN3-252ENST00000636907 CALN1Q9BXU9 219 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms