RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TADA2BQ86TJ2 420 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 TMEM110Q86TL2 294 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 PQLC3Q8N755 202 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 PLD5Q8N7P1 536 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 FBXO36Q8NEA4 188 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 WNT8BQ93098 351 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 FAM149B1Q96BN6 582 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 CENPTQ96BT3 561 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 RNF157Q96PX1 679 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 KLF6Q99612 283 aaPredicted RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 SLC4A5Q9BY07 1137 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 SNX25Q9H3E2 840 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 C12orf65Q9H3J6 166 aaKnown RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 DHX35Q9H5Z1 703 aaKnown RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 KIAA1257Q9ULG3 409 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 CHMP2BQ9UQN3 213 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 CLUHO75153 1309 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 C17orf102A2RUQ5 167 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 GOLGA8RI6L899 631 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 TNPO2O14787 897 aaKnown RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 STAU1O95793 577 aaKnown RBP11.08□□□□□ -0.64
CUX1-221ENST00000622516 RBL1P28749 1068 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 LILRA4P59901 499 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 ROR1Q01973 937 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 STAT4Q14765 748 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 FAM47CQ5HY64 1035 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 NUGGCQ68CJ6 796 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 C6orf89Q6UWU4 347 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 PPIL6Q8IXY8 311 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 NAT8LQ8N9F0 302 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 TTC13Q8NBP0 860 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 APPL2Q8NEU8 664 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 FAXDC2Q96IV6 333 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 ZIC5Q96T25 663 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 ARHGAP39Q9C0H5 1083 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 PCDH18Q9HCL0 1135 aa11.08□□□□□ -0.64
CUX1-221ENST00000622516 GOLGA6L7A0A1B0GV03 622 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 ALOX15BO15296 676 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 CPT1AP50416 773 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 BCAR1P56945 870 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 ANKRD20A8PQ5CZ79 823 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 PACS2Q86VP3 889 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 OSTM1Q86WC4 334 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 FAM131BQ86XD5 332 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 CCDC185Q8N715 623 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 LRRC52Q8N7C0 313 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 RNF169Q8NCN4 708 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 SPOCK2Q92563 424 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 TRIM56Q9BRZ2 755 aaKnown RBP11.07□□□□□ -0.64
CUX1-221ENST00000622516 RAB6BQ9NRW1 208 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 UNCXA6NJT0 531 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 GBE1Q04446 702 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 PAN2Q504Q3 1202 aaKnown RBP11.07□□□□□ -0.64
CUX1-221ENST00000622516 WSCD1Q658N2 575 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 FAM47EQ6ZV65 393 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 MICALCLQ6ZW33 695 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 FAM228AQ86W67 206 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 ADGRF2Q8IZF7 708 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 TRPV1Q8NER1 839 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 CCDC110Q8TBZ0 833 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 MAML1Q92585 1016 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 UBN1Q9NPG3 1134 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 SHOC2Q9UQ13 582 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 EFR3BQ9Y2G0 817 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 C5orf60A6NFR6 353 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 HAS3O00219 553 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 DNM1LO00429 736 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 PTGESO14684 152 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 HUS1O60921 280 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 ENDOD1O94919 500 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 STX2P32856 288 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 MLH1P40692 756 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 PURAQ00577 322 aaKnown RBP11.07□□□□□ -0.64
CUX1-221ENST00000622516 ADIGQ0VDE8 80 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 ACAP1Q15027 740 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 CCDC121Q6ZUS5 278 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 RASAL3Q86YV0 1011 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 RELL1Q8IUW5 271 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 PALM2Q8IXS6 379 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 FBF1Q8TES7 1133 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 FAF2Q96CS3 445 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 PAAF1Q9BRP4 392 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 EURLQ9NYK6 297 aa11.07□□□□□ -0.64
CUX1-221ENST00000622516 I3L4J1 428 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 TAF6P49848 677 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ARL4CP56559 192 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 SLC10A2Q12908 348 aaPredicted RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 TRIM32Q13049 653 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 NOMO1Q15155 1222 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 APBB1IPQ7Z5R6 666 aaPredicted RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 PIGZQ86VD9 579 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ANKRD52Q8NB46 1076 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ADAM32Q8TC27 787 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 GAD1Q99259 594 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 TBCBQ99426 244 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 USP29Q9HBJ7 922 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ETNK2Q9NVF9 386 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 DERAQ9Y315 318 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 H0YHG0 523 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 CYB561D2O14569 222 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms