RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 TRAIPQ9BWF2 469 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 WHRNQ9P202 907 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 NOVA2Q9UNW9 492 aaKnown RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 PRG3Q9Y2Y8 225 aaPredicted RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 KBTBD13C9JR72 458 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 BHMG1C9JSJ3 638 aaPredicted RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 ODC1P11926 461 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 PECAM1P16284 738 aaPredicted RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 GRK4P32298 578 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 ACADSBP45954 432 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 TKTL1P51854 596 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 BCAR1P56945 870 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 DEFB106AQ8N104 65 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 FAM71DQ8N9W8 422 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 ADAM32Q8TC27 787 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 ZNF296Q8WUU4 475 aaPredicted RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 P3H4Q92791 437 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 ATP6V1G3Q96LB4 118 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 TSPAN18Q96SJ8 248 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 KCNK16Q96T55 309 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 SNRNP25Q9BV90 132 aaKnown RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 DUSP16Q9BY84 665 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 PABPC3Q9H361 631 aaKnown RBP10.37□□□□□ -0.75
VTA1-205ENST00000620996 CRTAC1Q9NQ79 661 aa10.37□□□□□ -0.75
VTA1-205ENST00000620996 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.37□□□□□ -0.75
VTA1-205ENST00000620996 A0A0U1RQF3 1178 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 RPLP2P05387 115 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 CST5P28325 142 aaPredicted RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 PCK1P35558 622 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 NRLP54845 237 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 GSCP56915 257 aaPredicted RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 CA9Q16790 459 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 KIAA0319Q5VV43 1072 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 C9orf72Q96LT7 481 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 TBCBQ99426 244 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 LRRC4CQ9HCJ2 640 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 PTCH2Q9Y6C5 1203 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 RALGAPA2Q2PPJ7 1873 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 C3orf70A6NLC5 250 aaPredicted RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 XPO1O14980 1071 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 KIF1CO43896 1103 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 FKTNO75072 461 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 RBP3P10745 1247 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 NR1D1P20393 614 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 OR1G1P47890 313 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 LHX1P48742 406 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 GNGT1P63211 74 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 BASP1P80723 227 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 ACAP1Q15027 740 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 GLB1LQ6UWU2 654 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 LRIG3Q6UXM1 1119 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 ALLCQ8N6M5 410 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 MRRFQ96E11 262 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 PCED1BQ96HM7 432 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 FAM193BQ96PV7 902 aaPredicted RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 MAGEB5Q9BZ81 275 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 CDC42EP4Q9H3Q1 356 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 ATN1P54259 1190 aaPredicted RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 GDF10P55107 478 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 DPYSL3Q14195 570 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 KYNUQ16719 465 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 UPP1Q16831 310 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 CLEC20AQ6ZU45 233 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 FAM35AQ86V20 835 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 HOOK3Q86VS8 718 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 ECHDC2Q86YB7 292 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 ZDHHC17Q8IUH5 632 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 REM2Q8IYK8 340 aaPredicted RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 TTC13Q8NBP0 860 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 BBOF1Q8ND07 529 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 GIMAP7Q8NHV1 300 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 EPS8L3Q8TE67 593 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 PPM1EQ8WY54 764 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 SLCO2A1Q92959 643 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 HNRNPABQ99729 332 aaKnown RBP10.36□□□□□ -0.75
VTA1-205ENST00000620996 ULBP1Q9BZM6 244 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 TMBIM4Q9HC24 238 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 SAYSD1Q9NPB0 183 aa10.36□□□□□ -0.75
VTA1-205ENST00000620996 ITGB1P05556 798 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 USP17L7P0C7H9 530 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 BDNFP23560 247 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 RDXP35241 583 aaKnown RBP10.35□□□□□ -0.75
VTA1-205ENST00000620996 LIG3P49916 1009 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 HDAC4P56524 1084 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 MAGOHP61326 146 aaKnown RBP10.35□□□□□ -0.75
VTA1-205ENST00000620996 ROR1Q01973 937 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 TFDP2Q14188 446 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 BOLA3Q53S33 107 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 EFHC1Q5JVL4 640 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 BBS12Q6ZW61 710 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 NETO2Q8NC67 525 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 MYLPFQ96A32 169 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 HSFY1Q96LI6 401 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 SELENOSQ9BQE4 189 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 CAPS2Q9BXY5 557 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 IRAK4Q9NWZ3 460 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 AP4E1Q9UPM8 1137 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 MOXD2PA6NHM9 499 aa10.35□□□□□ -0.75
VTA1-205ENST00000620996 HMGB1P1B2RPK0 211 aaPredicted RBP10.35□□□□□ -0.75
VTA1-205ENST00000620996 M0QYT0 321 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms