RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 CSNK1G1Q9HCP0 422 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 WDR6Q9NNW5 1121 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 AVENQ9NQS1 362 aaPredicted RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 SEPT11Q9NVA2 429 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 ZMYM5Q9UJ78 669 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 MAGED2Q9UNF1 606 aaPredicted RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.61□□□□□ -0.71
UPF1-213ENST00000601981 MRPS23Q9Y3D9 190 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 NR2E1Q9Y466 385 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 NOTCH4Q99466 2003 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 XIRP2A4UGR9 3374 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 TCF20Q9UGU0 1960 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 NUP210Q8TEM1 1887 aaPredicted RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 GRXCR2A6NFK2 248 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 XPO1O14980 1071 aaKnown RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 BUB1O43683 1085 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 MICAL2O94851 1124 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 MYL4P12829 197 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 PRLRP16471 622 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 FSHRP23945 695 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 GPR15P49685 360 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 NAP1L1P55209 391 aaKnown RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 TFF2Q03403 129 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 SMAD2Q15796 467 aaKnown RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 PPP1R2P3Q6NXS1 205 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 TRIM72Q6ZMU5 477 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 PAQR9Q6ZVX9 377 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 OTOP3Q7RTS5 596 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 CEP112Q8N8E3 955 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 MSANTD4Q8NCY6 345 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 PDZD8Q8NEN9 1154 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 ZNF606Q8WXB4 792 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 SMOQ99835 787 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 PHF7Q9BWX1 381 aaPredicted RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 CARD6Q9BX69 1037 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 LRRC4Q9HBW1 653 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.6□□□□□ -0.713e-6■■■■□ 24.3
UPF1-213ENST00000601981 DNMT3BQ9UBC3 853 aaKnown RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 SAR1BQ9Y6B6 198 aa10.6□□□□□ -0.71
UPF1-213ENST00000601981 ZFP37Q9Y6Q3 630 aaPredicted RBP10.6□□□□□ -0.71
UPF1-213ENST00000601981 GRID2IPA4D2P6 1211 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TADA3O75528 432 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 MMEP08473 750 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 DDX6P26196 483 aaKnown RBP eCLIP10.59□□□□□ -0.71
UPF1-213ENST00000601981 YWHAQP27348 245 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 GABRR2P28476 465 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 GBP2P32456 591 aaPredicted RBP10.59□□□□□ -0.71
UPF1-213ENST00000601981 ACADSBP45954 432 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 PLA2G4AP47712 749 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 SLC5A3P53794 718 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 EPHA5P54756 1037 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 HADHBP55084 474 aaKnown RBP10.59□□□□□ -0.71
UPF1-213ENST00000601981 IFRD2Q12894 506 aaPredicted RBP10.59□□□□□ -0.71
UPF1-213ENST00000601981 CLEC16AQ2KHT3 1053 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TJAP1Q5JTD0 557 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 SDHAF4Q5VUM1 108 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TAF3Q5VWG9 929 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 GET4Q7L5D6 327 aaPredicted RBP10.59□□□□□ -0.71
UPF1-213ENST00000601981 RHOT2Q8IXI1 618 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 SIX6OS1Q8N1H7 587 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 PLCD3Q8N3E9 789 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TDRD5Q8NAT2 981 aaKnown RBP10.59□□□□□ -0.71
UPF1-213ENST00000601981 STKLD1Q8NE28 680 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 GPR152Q8TDT2 470 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 OVCA2Q8WZ82 227 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TFAP2BQ92481 460 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 MRPS31Q92665 395 aaKnown RBP10.59□□□□□ -0.71
UPF1-213ENST00000601981 FBXO32Q969P5 355 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 MYRFLQ96LU7 910 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 ASB2Q96Q27 587 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 KCNK16Q96T55 309 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 PCDHB18PQ96TA0 734 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 MIS12Q9H081 205 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 POMKQ9H5K3 350 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 SLITRK6Q9H5Y7 841 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 HCFC1R1Q9NWW0 138 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TAS2R14Q9NYV8 317 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 TRPM5Q9NZQ8 1165 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 PRKAG3Q9UGI9 489 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 SNX12Q9UMY4 172 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 PCDHGC3Q9UN70 934 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 USTQ9Y2C2 406 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 HYOU1Q9Y4L1 999 aa10.59□□□□□ -0.71
UPF1-213ENST00000601981 HELZP42694 1942 aaKnown RBP10.58□□□□□ -0.72
UPF1-213ENST00000601981 SOBPA7XYQ1 873 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 EFCAB8A8MWE9 144 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 TMCO5BA8MYB1 307 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 ENC1O14682 589 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 PALMO75781 387 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 MTA2O94776 668 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 LSM8O95777 96 aaKnown RBP10.58□□□□□ -0.72
UPF1-213ENST00000601981 FTLP02792 175 aaPredicted RBP10.58□□□□□ -0.72
UPF1-213ENST00000601981 TCP1P17987 556 aaKnown RBP10.58□□□□□ -0.72
UPF1-213ENST00000601981 NOP2P46087 812 aaKnown RBP10.58□□□□□ -0.72
UPF1-213ENST00000601981 CACNA2D1P54289 1103 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 TUBB4BP68371 445 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 CKAP4Q07065 602 aaKnown RBP10.58□□□□□ -0.72
UPF1-213ENST00000601981 PDE4CQ08493 712 aa10.58□□□□□ -0.72
UPF1-213ENST00000601981 SLFN11Q7Z7L1 901 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms