RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SMTNL1A8MU46 457 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 BECN2A8MW95 431 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 MED7O43513 233 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 ZNF18P17022 549 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 CD72P21854 359 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 GNA15P30679 374 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 IFNAR2P48551 515 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 TKTL1P51854 596 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 NUBP1P53384 320 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 COPB1P53618 953 aaKnown RBP17.73■□□□□ 0.43
TRIM28-215ENST00000601150 TNK2Q07912 1038 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 RUNX3Q13761 415 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 UBXN2BQ14CS0 331 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 SKOR2Q2VWA4 1001 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-215ENST00000601150 ITPRIPL2Q3MIP1 535 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 FKBP15Q5T1M5 1219 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 DPY19L2P1Q6NXN4 242 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 SCD5Q86SK9 330 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 ARHGAP18Q8N392 663 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 KIAA1958Q8N8K9 716 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 SLC35F5Q8WV83 523 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 OSCP1Q8WVF1 389 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 KCTD13Q8WZ19 329 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 SECISBP2LQ93073 1101 aaKnown RBP17.73■□□□□ 0.43
TRIM28-215ENST00000601150 FUCA2Q9BTY2 467 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 LSM14BQ9BX40 385 aaKnown RBP17.73■□□□□ 0.43
TRIM28-215ENST00000601150 OSBPL6Q9BZF3 934 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 KCNH6Q9H252 994 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 LTB4R2Q9NPC1 389 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 HPS4Q9NQG7 708 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 OSER1Q9NX31 292 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 CLIC5Q9NZA1 410 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 NAGPAQ9UK23 515 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 AJAP1Q9UKB5 411 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-215ENST00000601150 WNT6Q9Y6F9 365 aa17.73■□□□□ 0.43
TRIM28-215ENST00000601150 SYCE3A1L190 88 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 THAP12O43422 761 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ZBED1O96006 694 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 RARGP13631 454 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ATP5C1P36542 298 aaKnown RBP17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ADIGQ0VDE8 80 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 MEA1Q16626 185 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 KLHDC7AQ5VTJ3 777 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 TRIM68Q6AZZ1 485 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 PM20D1Q6GTS8 502 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 C1orf228Q6PIY5 440 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 RALGPS2Q86X27 583 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-215ENST00000601150 SIX6OS1Q8N1H7 587 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ZNF276Q8N554 614 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 TTC8Q8TAM2 541 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ZNF606Q8WXB4 792 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 FAM3CQ92520 227 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ATP2A3Q93084 1043 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 PRRX2Q99811 253 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 ULBP1Q9BZM6 244 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 HSD3B7Q9H2F3 369 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 EBF3Q9H4W6 596 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.72■□□□□ 0.43
TRIM28-215ENST00000601150 CFAP97Q9P2B7 532 aa17.72■□□□□ 0.43
TRIM28-215ENST00000601150 SHISA7A6NL88 538 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 FAM170BA6NMN3 283 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 LGALS16A8MUM7 142 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 SPECC1L-ADORA2AF8WAN1 911 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 FOXN3O00409 490 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-215ENST00000601150 RALAP11233 206 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 ARSAP15289 507 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 TARSP26639 723 aaKnown RBP17.71■□□□□ 0.43
TRIM28-215ENST00000601150 CTHP32929 405 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 SOX9P48436 509 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 ZNF165P49910 485 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 PTK2Q05397 1052 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 RAPGEF1Q13905 1077 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 KLHDC10Q6PID8 442 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 TADA2BQ86TJ2 420 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 DHX40Q8IX18 779 aaKnown RBP17.71■□□□□ 0.43
TRIM28-215ENST00000601150 CCDC105Q8IYK2 499 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 CPA6Q8N4T0 437 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 ZFRQ96KR1 1074 aaKnown RBP17.71■□□□□ 0.43
TRIM28-215ENST00000601150 CDK5RAP1Q96SZ6 601 aaKnown RBP17.71■□□□□ 0.43
TRIM28-215ENST00000601150 ACP6Q9NPH0 428 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 PLCB1Q9NQ66 1216 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 RAPGEFL1Q9UHV5 662 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 MTF2Q9Y483 593 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-215ENST00000601150 FHOD1Q9Y613 1164 aa17.71■□□□□ 0.43
TRIM28-215ENST00000601150 E2F8A0AVK6 867 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 LRRC10BA6NIK2 292 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 SLC9A3R1O14745 358 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 NCAM2O15394 837 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 TBX18O95935 607 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 DCNP07585 359 aaKnown RBP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 UCHL3P15374 230 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 RGS7P49802 495 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 YWHAGP61981 247 aaKnown RBP eCLIP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 DRAP1Q14919 205 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 EML3Q32P44 896 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 C10orf120Q5SQS8 335 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 PMF1Q6P1K2 205 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 DENND1BQ6P3S1 775 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 FAM71AQ8IYT1 594 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 SCML4Q8N228 414 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms