RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 UNC93AQ86WB7 457 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 METTL23Q86XA0 190 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 FAM71AQ8IYT1 594 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 SLC4A11Q8NBS3 891 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 DEPDC1BQ8WUY9 529 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CHFRQ96EP1 664 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 NELL2Q99435 816 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 ACBD6Q9BR61 282 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 LSM14BQ9BX40 385 aaKnown RBP9.28□□□□□ -0.92
TRIM28-214ENST00000600840 STK33Q9BYT3 514 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 EDEM3Q9BZQ6 932 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 ELOVL4Q9GZR5 314 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CHRDQ9H2X0 955 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CRTAC1Q9NQ79 661 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CISHQ9NSE2 258 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 FAM207AQ9NSI2 230 aaPredicted RBP9.28□□□□□ -0.92
TRIM28-214ENST00000600840 HSFX1Q9UBD0 423 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 HMGXB4Q9UGU5 601 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 GTF3C4Q9UKN8 822 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 DSEQ9UL01 958 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 CCL26Q9Y258 94 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 ASB3Q9Y575 518 aa9.28□□□□□ -0.92
TRIM28-214ENST00000600840 PTPRDP23468 1912 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 MYBPHLA2RUH7 354 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 MAN2B1O00754 1011 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 CHADO15335 359 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 CBFA2T2O43439 604 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 HUS1O60921 280 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 ZIC2O95409 532 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TOP3BO95985 862 aaKnown RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 GYPCP04921 128 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TBXAS1P24557 533 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 GNL1P36915 607 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 LHX1P48742 406 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TUFMP49411 452 aaKnown RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 NDST1P52848 882 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TNNC1P63316 161 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 DRAP1Q14919 205 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 DDR2Q16832 855 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 E4F1Q66K89 784 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 NAIF1Q69YI7 327 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TXNDC8Q6A555 127 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 HEATR6Q6AI08 1181 aaKnown RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 ENOSF1Q7L5Y1 443 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 IRF2BP2Q7Z5L9 587 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 ADGRF2Q8IZF7 708 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 THEM5Q8N1Q8 247 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 PPM1KQ8N3J5 372 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 FAM160A2Q8N612 972 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 MAB21L3Q8N8X9 362 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 SPPL2BQ8TCT7 592 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 DDX1Q92499 740 aaKnown RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 MMS19Q96T76 1030 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 SYT11Q9BT88 431 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TMEM121BQ9BXQ6 578 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 DPEP3Q9H4B8 488 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 TASP1Q9H6P5 420 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 POLR3BQ9NW08 1133 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 DDX43Q9NXZ2 648 aaKnown RBP9.27□□□□□ -0.93
TRIM28-214ENST00000600840 CAPN11Q9UMQ6 739 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 DAAM1Q9Y4D1 1078 aa9.27□□□□□ -0.93
TRIM28-214ENST00000600840 A0A1W2PQJ5 194 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 SPECC1L-ADORA2AF8WAN1 911 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PES1O00541 588 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 KCNK5O95279 499 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 ADCY5O95622 1261 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 TPM2P07951 284 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PDGFRBP09619 1106 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PNMA6AP0CW24 399 aaPredicted RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 P4HA1P13674 534 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PTPN1P18031 435 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 HNRNPH3P31942 346 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 CTHP32929 405 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 NRLP54845 237 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 MFAP3P55082 362 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 POLR2FP61218 127 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 RING1Q06587 406 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PON2Q15165 354 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 INTS6LQ5JSJ4 861 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 SPECC1LQ69YQ0 1117 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 TRIM68Q6AZZ1 485 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 PKN3Q6P5Z2 889 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 SCARA5Q6ZMJ2 495 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 ITIH5Q86UX2 942 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 YAF2Q8IY57 180 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 DCP1BQ8IZD4 617 aaKnown RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 BPIFB1Q8TDL5 484 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 CSGALNACT1Q8TDX6 532 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 TFAP2BQ92481 460 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 USP13Q92995 863 aaPredicted RBP9.26□□□□□ -0.93
TRIM28-214ENST00000600840 FAM81BQ96LP2 452 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 SLC22A12Q96S37 553 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 CYP2S1Q96SQ9 504 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 IMPG2Q9BZV3 1241 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 TRIM5Q9C035 493 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 SMOC1Q9H4F8 434 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 ACP6Q9NPH0 428 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 HPS4Q9NQG7 708 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 GKN1Q9NS71 199 aa9.26□□□□□ -0.93
TRIM28-214ENST00000600840 AIPL1Q9NZN9 384 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms