RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ST13P4Q8IZP2 240 aaPredicted RBP19.08■□□□□ 0.64
UPF1-210ENST00000600689 NDUFAF2Q8N183 169 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 CENPKQ9BS16 269 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 RHBDL2Q9NX52 303 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 HEY1Q9Y5J3 304 aa19.08■□□□□ 0.64
UPF1-210ENST00000600689 A8MXQ7 604 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 GRIA2P42262 883 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 BTKQ06187 659 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 DPYSL3Q14195 570 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 CRLF3Q8IUI8 442 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 FBXL18Q96ME1 805 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 MSTO1Q9BUK6 570 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 HAPLN2Q9GZV7 340 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 DNAJC6O75061 913 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 MSX2P35548 267 aaPredicted RBP19.07■□□□□ 0.64
UPF1-210ENST00000600689 ACTR3P61158 418 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 RABGAP1LQ5R372 815 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 OLFML2BQ68BL8 750 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 C4orf19Q8IY42 314 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 OR6Y1Q8NGX8 325 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 TFAP2BQ92481 460 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 PPP1R36Q96LQ0 422 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 GCNAQ96QF7 691 aa19.07■□□□□ 0.64
UPF1-210ENST00000600689 DMAP1Q9NPF5 467 aaPredicted RBP19.07■□□□□ 0.64
UPF1-210ENST00000600689 DDX18Q9NVP1 670 aaKnown RBP19.07■□□□□ 0.64
UPF1-210ENST00000600689 CTDP1Q9Y5B0 961 aaPredicted RBP19.07■□□□□ 0.64
UPF1-210ENST00000600689 GRAP2O75791 330 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 PROCP04070 461 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 ATP6V1B1P15313 513 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 ZNF280AP59817 542 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 MED21Q13503 144 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 HIC1Q14526 733 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 MMEL1Q495T6 779 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 VWA5B1Q5TIE3 1220 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 PCGF5Q86SE9 256 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 CDR2LQ86X02 465 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 IMPG2Q9BZV3 1241 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 FBXO40Q9UH90 709 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 A0A0B4J269 797 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 APRTP07741 180 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 F7P08709 466 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 NCF2P19878 526 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 RAP1GAPP47736 663 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 CDK7P50613 346 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 RPL10AP62906 217 aaKnown RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 TNFAIP1Q13829 316 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 TRMT5Q32P41 509 aaKnown RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 SH3PXD2AQ5TCZ1 1133 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 MARK2Q7KZI7 788 aaKnown RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 DRAXINQ8NBI3 349 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 SLC44A1Q8WWI5 657 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 PHF12Q96QT6 1004 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 WWP1Q9H0M0 922 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 VCX3BQ9H321 246 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 VCX3AQ9NNX9 186 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 AK5Q9Y6K8 562 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 MCF2LO15068 1137 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 CREB3O43889 395 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 EXTL3O43909 919 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 ITGBL1O95965 494 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 KRT3P12035 628 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 KCNA4P22459 653 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 TNFSF9P41273 254 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 MYL6P60660 151 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 DYNC1I2Q13409 638 aaKnown RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 CCDC142Q17RM4 750 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 PPP6R3Q5H9R7 873 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 RNF111Q6ZNA4 994 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 NET1Q7Z628 596 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 MYLK4Q86YV6 388 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 UNC5BQ8IZJ1 945 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 ARFGAP1Q8N6T3 406 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 GDPD5Q8WTR4 605 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 OPTNQ96CV9 577 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 MPP4Q96JB8 637 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 PDCD2LQ9BRP1 358 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 DHRS4Q9BTZ2 278 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 MMADHCQ9H3L0 296 aaPredicted RBP19.06■□□□□ 0.64
UPF1-210ENST00000600689 ST6GALNAC4Q9H4F1 302 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 PREBQ9HCU5 417 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 XPNPEP1Q9NQW7 623 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 ACSS2Q9NR19 701 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 ADAMTS6Q9UKP5 1117 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 NR2E3Q9Y5X4 410 aa19.06■□□□□ 0.64
UPF1-210ENST00000600689 VWA5AO00534 786 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 HNRNPRO43390 633 aaKnown RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 LRCH4O75427 683 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 BAATQ14032 418 aaPredicted RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 ARHGEF16Q5VV41 709 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 BSPRYQ5W0U4 402 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 TRMT10BQ6PF06 316 aaKnown RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 TRIM72Q6ZMU5 477 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 APLFQ8IW19 511 aaPredicted RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 FAM81AQ8TBF8 368 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 MTMR12Q9C0I1 747 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 PXMP2Q9NR77 195 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 GPATCH2LQ9NWQ4 482 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 ZC3H7BQ9UGR2 993 aaKnown RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 CAPN14A8MX76 684 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 ITM2AO43736 263 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms