RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 KCTD10Q9H3F6 313 aa18.62■□□□□ 0.57
SHKBP1-223ENST00000600552 E2F8A0AVK6 867 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 TBC1D3BA6NDS4 549 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 SGK1O00141 431 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 PDXKO00764 312 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 TNFRSF10BO14763 440 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 ALDH1A2O94788 518 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 TBX18O95935 607 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 TRIM49P0CI25 452 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 TRIM49CP0CI26 452 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 HNRNPLP14866 589 aaKnown RBP eCLIP18.61■□□□□ 0.571e-11■■■■□ 20.2
SHKBP1-223ENST00000600552 CD58P19256 250 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 CMA1P23946 247 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 PGFP49763 221 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 MRPS21P82921 87 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 GAD2Q05329 585 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 CRY1Q16526 586 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 ZACNQ401N2 412 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 ARMCX6Q7L4S7 300 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 BBS7Q8IWZ6 715 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 MDGA1Q8NFP4 955 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 HMGB4Q8WW32 186 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 OVCA2Q8WZ82 227 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 DDX1Q92499 740 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 VRTNQ9H8Y1 702 aa18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 MYO18AQ92614 2054 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-223ENST00000600552 BCLAF3A2AJT9 711 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 GRIA2P42262 883 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 WASP42768 502 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 SYKP43405 635 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 GCLMP48507 274 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 VAMP7P51809 220 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 CLDN10P78369 228 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 N4BP2L1Q5TBK1 243 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 TMEM25Q86YD3 366 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 SLC9A9Q8IVB4 645 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 IL17RCQ8NAC3 791 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 ZMIZ2Q8NF64 920 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 TMC2Q8TDI7 906 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 PIGKQ92643 395 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 EDEM2Q9BV94 578 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 NUDT5Q9UKK9 219 aa18.6■□□□□ 0.57
SHKBP1-223ENST00000600552 C4orf47A7E2U8 309 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 TLR5O60602 858 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 FAM200BP0CF97 657 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 KRT13P13646 458 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 TRIM21P19474 475 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 NR2F2P24468 414 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 NDUFA8P51970 172 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 KRT85P78386 507 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 EOGTQ5NDL2 527 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 CYP2U1Q7Z449 544 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 FRMD1Q8N878 549 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 ZFRQ96KR1 1074 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 CNOT6LQ96LI5 555 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 IMPG2Q9BZV3 1241 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 POLMQ9NP87 494 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 TLR8Q9NR97 1041 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 DEC1Q9P2X7 70 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 USP25Q9UHP3 1055 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 NUP205Q92621 2012 aa18.59■□□□□ 0.57
SHKBP1-223ENST00000600552 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TCRBV21S2A2A0A5A6 115 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 PATE3B3GLJ2 98 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 MDM4O15151 490 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TRIM24O15164 1050 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 CYP26A1O43174 497 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TULP3O75386 442 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 ASS1P00966 412 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 ASPAP45381 313 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 LIMK1P53667 647 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 C1orf220Q5T0J3 134 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 C10orf76Q5T2E6 689 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 PMS2CLQ68D20 193 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TPGS1Q6ZTW0 290 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 GPRIN1Q7Z2K8 1008 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 RASSF3Q86WH2 238 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TMEFF1Q8IYR6 380 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 CRYBG2Q8N1P7 616 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 DEFB119Q8N690 84 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TAF4BQ92750 862 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 BHMTQ93088 406 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 TWNKQ96RR1 684 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 FBXO44Q9H4M3 255 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 SPHK2Q9NRA0 654 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 COMMD8Q9NX08 183 aa18.58■□□□□ 0.56
SHKBP1-223ENST00000600552 GON4LQ3T8J9 2241 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 KHNYNO15037 678 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 ACO1P21399 889 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 TNFRSF4P43489 277 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 UAP1L1Q3KQV9 507 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 ZNF394Q53GI3 561 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 UNC93AQ86WB7 457 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 FAM186BQ8IYM0 893 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 KIAA1958Q8N8K9 716 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 CCDC150Q8NCX0 1101 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 TAS1R2Q8TE23 839 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 WHAMMQ8TF30 809 aa18.57■□□□□ 0.56
SHKBP1-223ENST00000600552 OTUB2Q96DC9 234 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms