RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GREB1Q4ZG55 1949 aa14.95□□□□□ -0.02
SHKBP1-217ENST00000598558 A0A1W2PQC6 194 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 SCAMP3O14828 347 aaKnown RBP14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 MED7O43513 233 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 TLR5O60602 858 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 CKMP06732 381 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 RARGP13631 454 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 DAOAP59103 153 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 TNK2Q07912 1038 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 SIGLEC14Q08ET2 396 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 ZNF268Q14587 947 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 ZNF77Q15935 545 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 MEA1Q16626 185 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 FILIP1LQ4L180 1135 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 SCUBE3Q8IX30 993 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 OLIG1Q8TAK6 271 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 BPIFB1Q8TDL5 484 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 EPS8L1Q8TE68 723 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 HSFY1Q96LI6 401 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 TTYH3Q9C0H2 523 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 RBSNQ9H1K0 784 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 LINC00597Q9H2U6 94 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 CYLDQ9NQC7 956 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 TLR8Q9NR97 1041 aaKnown RBP14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 NAGPAQ9UK23 515 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 CA14Q9ULX7 337 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 ARHGAP26Q9UNA1 814 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 CPQQ9Y646 472 aa14.94□□□□□ -0.02
SHKBP1-217ENST00000598558 COL4A3Q01955 1670 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 TMEM221A6NGB7 291 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 OTOL1A6NHN0 477 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 M0R296 226 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 LEFTY2O00292 366 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 DPYSL4O14531 572 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 PAPSS1O43252 624 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 GREM1O60565 184 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 FYNP06241 537 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 MMEP08473 750 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 STAT1P42224 750 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 SLC8A3P57103 927 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 YWHAGP61981 247 aaKnown RBP eCLIP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 USP4Q13107 963 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 E4F1Q66K89 784 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 TRIM68Q6AZZ1 485 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 TMEM110Q86TL2 294 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 C1orf131Q8NDD1 294 aaKnown RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 TTC16Q8NEE8 873 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 TTC8Q8TAM2 541 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 STK32AQ8WU08 396 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 DEPDC1BQ8WUY9 529 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 E2F7Q96AV8 911 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 PIWIL1Q96J94 861 aaKnown RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 CPXM1Q96SM3 734 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 PCDHB18PQ96TA0 734 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 FAM83CQ9BQN1 747 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 KLF16Q9BXK1 252 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 XPO4Q9C0E2 1151 aaKnown RBP14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 MIS12Q9H081 205 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 LHX5Q9H2C1 402 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 ZMYM5Q9UJ78 669 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 MYO10Q9HD67 2058 aa14.93□□□□□ -0.02
SHKBP1-217ENST00000598558 NCOR1O75376 2440 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 E5RJQ4 531 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 CHADO15335 359 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 MBL2P11226 248 aaPredicted RBP14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 ARSAP15289 507 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 TCF3P15923 654 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 PFKLP17858 780 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 KRT9P35527 623 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 TUBP50607 506 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 BPIFB4P59827 614 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 TPM4P67936 248 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 FMO1Q01740 532 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 PDCLQ13371 301 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 TAF5Q15542 800 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 SLC44A4Q53GD3 710 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 BSPRYQ5W0U4 402 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 IRF2BP2Q7Z5L9 587 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 SCML4Q8N228 414 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 EDEM1Q92611 657 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 SPAG5Q96R06 1193 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 BRD9Q9H8M2 597 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 HPS4Q9NQG7 708 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 CNGB3Q9NQW8 809 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 ST7Q9NRC1 585 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 HEBP1Q9NRV9 189 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 CLIC5Q9NZA1 410 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 WNT16Q9UBV4 365 aa14.92□□□□□ -0.02
SHKBP1-217ENST00000598558 CUL9Q8IWT3 2517 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 ZNF263O14978 683 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 GPR37L1O60883 481 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 ERBB2P04626 1255 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 CDH5P33151 784 aaPredicted RBP14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 SOX9P48436 509 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 ARID5AQ03989 594 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 MTF1Q14872 753 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 PTPN20Q4JDL3 420 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 SIX5Q8N196 739 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 SIX6OS1Q8N1H7 587 aa14.91□□□□□ -0.02
SHKBP1-217ENST00000598558 ZNF276Q8N554 614 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms