RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ARSAP15289 507 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 CD19P15391 556 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 RFX1P22670 979 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 SOX9P48436 509 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 PSEN1P49768 467 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 PTPN5P54829 565 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 RUNX3Q13761 415 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 UBXN2BQ14CS0 331 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 CNGA2Q16280 664 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 TRIM68Q6AZZ1 485 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 PM20D1Q6GTS8 502 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 SASS6Q6UVJ0 657 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 SCD5Q86SK9 330 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 DDX42Q86XP3 938 aaKnown RBP eCLIP17■□□□□ 0.31
TRIM28-213ENST00000598355 SCML4Q8N228 414 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 KCTD13Q8WZ19 329 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 FAM3CQ92520 227 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17■□□□□ 0.31
TRIM28-213ENST00000598355 HESX1Q9UBX0 185 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 FAM170BA6NMN3 283 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 MBL2P11226 248 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-213ENST00000598355 BRD2P25440 801 aaKnown RBP16.99■□□□□ 0.31
TRIM28-213ENST00000598355 SLC8A3P57103 927 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 APBA1Q02410 837 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 HSP90AA4PQ58FG1 418 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 CC2D1AQ6P1N0 951 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-213ENST00000598355 GJB7Q6PEY0 223 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 SLC35F5Q8WV83 523 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 ATP2A3Q93084 1043 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 HSD3B7Q9H2F3 369 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 EBF3Q9H4W6 596 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 UBE2TQ9NPD8 197 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-213ENST00000598355 CLIC5Q9NZA1 410 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 AJAP1Q9UKB5 411 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-213ENST00000598355 WNT6Q9Y6F9 365 aa16.99■□□□□ 0.31
TRIM28-213ENST00000598355 ATG2BQ96BY7 2078 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 A0A1W2PQH9 124 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 E2F8A0AVK6 867 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 STK25O00506 426 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 GREM1O60565 184 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 GABBR2O75899 941 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 ABL1P00519 1130 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 CHRNB1P11230 501 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 ZNF18P17022 549 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 PLA2G5P39877 138 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 RPL34P49207 117 aaKnown RBP16.98■□□□□ 0.31
TRIM28-213ENST00000598355 MFAP3P55082 362 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 MYL5Q02045 173 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 NHLH1Q02575 133 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 TYRO3Q06418 890 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 KCNMA1Q12791 1236 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 NCAPHQ15003 741 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 GAB4Q2WGN9 574 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 IER2Q9BTL4 223 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 CHRDQ9H2X0 955 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 ECT2Q9H8V3 914 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 DUS2Q9NX74 493 aaKnown RBP16.98■□□□□ 0.31
TRIM28-213ENST00000598355 SMPD4Q9NXE4 827 aa16.98■□□□□ 0.31
TRIM28-213ENST00000598355 MYO15AQ9UKN7 3530 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 NCAM2O15394 837 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 IFNAR2P48551 515 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 TKTL1P51854 596 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 KPNA1P52294 538 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-213ENST00000598355 CCINQ13939 588 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 KRT31Q15323 416 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 KLHL40Q2TBA0 621 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 MAMSTRQ6ZN01 415 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 CREBRFQ8IUR6 639 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 CPA6Q8N4T0 437 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 FUCA2Q9BTY2 467 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 KLF16Q9BXK1 252 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-213ENST00000598355 CFAP97Q9P2B7 532 aa16.97■□□□□ 0.31
TRIM28-213ENST00000598355 M0QYV0 167 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 TRDMT1O14717 391 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 SLC9A3R1O14745 358 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 ZBED1O96006 694 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 CALCAP01258 141 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 GJA4P35212 333 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 ATP5C1P36542 298 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 ADIGQ0VDE8 80 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 TMEM196Q5HYL7 178 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 CAVIN1Q6NZI2 390 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 PMF1Q6P1K2 205 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 APTXQ7Z2E3 356 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 MAML2Q8IZL2 1156 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 ARHGAP18Q8N392 663 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 UBA3Q8TBC4 463 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 SECISBP2LQ93073 1101 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 WBP2Q969T9 261 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 OTUB2Q96DC9 234 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 CDK5RAP1Q96SZ6 601 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 BPIFA3Q9BQP9 254 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 NAA15Q9BXJ9 866 aaKnown RBP16.96■□□□□ 0.31
TRIM28-213ENST00000598355 ULBP1Q9BZM6 244 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 IRF2BPLQ9H1B7 796 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 LINC00597Q9H2U6 94 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 CNGB3Q9NQW8 809 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 FANCLQ9NW38 375 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 NAGPAQ9UK23 515 aa16.96■□□□□ 0.31
TRIM28-213ENST00000598355 NDRG2Q9UN36 371 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms