RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MIB1Q86YT6 1006 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 ETFBKMTQ8IXQ9 262 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 CPA6Q8N4T0 437 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 NDRG1Q92597 394 aaKnown RBP11.09□□□□□ -0.63
LIG1-213ENST00000596672 ATP2A3Q93084 1043 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 CYFIP2Q96F07 1278 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 MED15Q96RN5 788 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 ZSWIM1Q9BR11 485 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 KLF16Q9BXK1 252 aaPredicted RBP11.09□□□□□ -0.63
LIG1-213ENST00000596672 NIF3L1Q9GZT8 377 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 SMOC1Q9H4F8 434 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 TMEM8AQ9HCN3 771 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 MAN1B1Q9UKM7 699 aa11.09□□□□□ -0.63
LIG1-213ENST00000596672 CACNA1BQ00975 2339 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 A0A1W2PQH9 124 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 PPP1R3GB7ZBB8 358 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 RTN3O95197 1032 aaPredicted RBP11.08□□□□□ -0.64
LIG1-213ENST00000596672 KLKB1P03952 638 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 DRD1P21728 446 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 KIR2DL1P43626 348 aaPredicted RBP11.08□□□□□ -0.64
LIG1-213ENST00000596672 PPP3CCP48454 512 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 KIF11P52732 1056 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 SEC13P55735 322 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 ENPEPQ07075 957 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 HECTD3Q5T447 861 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 ZNF658Q5TYW1 1059 aaPredicted RBP11.08□□□□□ -0.64
LIG1-213ENST00000596672 PRR23BQ6ZRT6 265 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 TTC30AQ86WT1 665 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 CCDC33Q8N5R6 958 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 FRMD1Q8N878 549 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 KAT5Q92993 513 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 SLC35C1Q96A29 364 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 TNIP3Q96KP6 325 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 SLITRK1Q96PX8 696 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 HINFPQ9BQA5 517 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 CYP3A43Q9HB55 503 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 CISHQ9NSE2 258 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 NCDNQ9UBB6 729 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 CIZ1Q9ULV3 898 aaPredicted RBP11.08□□□□□ -0.64
LIG1-213ENST00000596672 INVSQ9Y283 1065 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 COQ4Q9Y3A0 265 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 USP24Q9UPU5 2620 aa11.08□□□□□ -0.64
LIG1-213ENST00000596672 A0A0A0MRY4 1105 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 RNF225M0QZC1 329 aaPredicted RBP11.07□□□□□ -0.64
LIG1-213ENST00000596672 SGK1O00141 431 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 TLR5O60602 858 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 ADAM23O75077 832 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 RETP07949 1114 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 IRF1P10914 325 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 ACO1P21399 889 aaKnown RBP11.07□□□□□ -0.64
LIG1-213ENST00000596672 GTF2H1P32780 548 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 ATXN1P54253 815 aaKnown RBP11.07□□□□□ -0.64
LIG1-213ENST00000596672 NRLP54845 237 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 DMC1Q14565 340 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 NUMA1Q14980 2115 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 C2orf27AQ580R0 203 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 KRT39Q6A163 491 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 LAIR1Q6GTX8 287 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 TTI2Q6NXR4 508 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 SYT13Q7L8C5 426 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 NAT16Q8N8M0 369 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 LMO3Q8TAP4 145 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 GAB3Q8WWW8 586 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 OVCA2Q8WZ82 227 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 GSDMAQ96QA5 445 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 NT5C1AQ9BXI3 368 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 DUSP16Q9BY84 665 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 CD248Q9HCU0 757 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 CYLDQ9NQC7 956 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.07□□□□□ -0.64
LIG1-213ENST00000596672 RAB20Q9NX57 234 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 SCML2Q9UQR0 700 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 ATP6V1DQ9Y5K8 247 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 USP3Q9Y6I4 520 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 FRYQ5TBA9 3013 aa11.07□□□□□ -0.64
LIG1-213ENST00000596672 TNRC6BQ9UPQ9 1833 aaKnown RBP11.07□□□□□ -0.64
LIG1-213ENST00000596672 KMT2BQ9UMN6 2715 aaPredicted RBP11.06□□□□□ -0.64
LIG1-213ENST00000596672 IGF2RP11717 2491 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 E2F8A0AVK6 867 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 AXIN1O15169 862 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 CETN3O15182 167 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 NFATC1O95644 943 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 FAM200BP0CF97 657 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 BCKDHBP21953 392 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 RPL13P26373 211 aaKnown RBP11.06□□□□□ -0.64
LIG1-213ENST00000596672 MXI1P50539 228 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 TUBP50607 506 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 KDSRQ06136 332 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 LRMPQ12912 555 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 SF3A2Q15428 464 aaKnown RBP11.06□□□□□ -0.64
LIG1-213ENST00000596672 PLK5Q496M5 336 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 Q6ZNB5 142 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 ALLCQ8N6M5 410 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 IL17RCQ8NAC3 791 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 FBXL13Q8NEE6 735 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 TFAP2BQ92481 460 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 TIGD1Q96MW7 591 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 DUSP15Q9H1R2 295 aaPredicted RBP11.06□□□□□ -0.64
LIG1-213ENST00000596672 SEMA4GQ9NTN9 838 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 COMMD8Q9NX08 183 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms