RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PDGFRBP09619 1106 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 STIP1P31948 543 aaKnown RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 HDAC4P56524 1084 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 NKX3-2P78367 333 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ZNF618Q5T7W0 954 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 GKAP1Q5VSY0 366 aaPredicted RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 MAML1Q92585 1016 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 SNRNP25Q9BV90 132 aaKnown RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 DNAI2Q9GZS0 605 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 PPCSQ9HAB8 311 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 PCDH18Q9HCL0 1135 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 KIAA0754O94854 1291 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 TGM2P21980 687 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ADORA2BP29275 332 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 LRPAP1P30533 357 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 MAGEA9P43362 315 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ARL4CP56559 192 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 CACNB2Q08289 660 aaPredicted RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 TRIM32Q13049 653 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ZC3H12AQ5D1E8 599 aaKnown RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 SCYL2Q6P3W7 929 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 TADA2BQ86TJ2 420 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 C10orf67Q8IYJ2 551 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ADGRF2Q8IZF7 708 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 CACNA2D3Q8IZS8 1091 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 PLD5Q8N7P1 536 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 CENPIQ92674 756 aaPredicted RBP20.54■□□□□ 0.88
CLIP3-206ENST00000593074 FAF2Q96CS3 445 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ZNF670Q9BS34 389 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 GPATCH2LQ9NWQ4 482 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 TBK1Q9UHD2 729 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 ST3GAL5Q9UNP4 418 aa20.54■□□□□ 0.88
CLIP3-206ENST00000593074 BRAFP15056 766 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 WARSP23381 471 aaKnown RBP20.53■□□□□ 0.88
CLIP3-206ENST00000593074 LILRA4P59901 499 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 GAD2Q05329 585 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 RASA2Q15283 850 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 ANKRD20A8PQ5CZ79 823 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 SLC9A4Q6AI14 798 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 TOP6BLQ8N6T0 577 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 PQLC3Q8N755 202 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 CLEC4CQ8WTT0 213 aa20.53■□□□□ 0.88
CLIP3-206ENST00000593074 FOXO6A8MYZ6 492 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 GOLGA8MH3BSY2 632 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 PTGESO14684 152 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 TMEM63AO94886 807 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 ACADSBP45954 432 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 NR1H3Q13133 447 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 DARS2Q6PI48 645 aaKnown RBP20.52■□□□□ 0.88
CLIP3-206ENST00000593074 SERINC5Q86VE9 423 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 SMC1BQ8NDV3 1235 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 SLC2A14Q8TDB8 520 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 RTP4Q96DX8 246 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 TNIP3Q96KP6 325 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 HSFY1Q96LI6 401 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 VPS37BQ9H9H4 285 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 XPNPEP3Q9NQH7 507 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 CLUHO75153 1309 aa20.52■□□□□ 0.88
CLIP3-206ENST00000593074 APOL1O14791 398 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 HUS1O60921 280 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 TFE3P19532 575 aaPredicted RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 IFNAR2P48551 515 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 TMED2Q15363 201 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 CA9Q16790 459 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 HP1BP3Q5SSJ5 553 aaPredicted RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 FNBP1LQ5T0N5 605 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 ZC3H18Q86VM9 953 aaKnown RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 SRRM1Q8IYB3 904 aaKnown RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 CCDC13Q8IYE1 715 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 PCDH19Q8TAB3 1148 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 PPP1R10Q96QC0 940 aaKnown RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 WDR83Q9BRX9 315 aaKnown RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 UBN1Q9NPG3 1134 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 CHST12Q9NRB3 414 aa20.52■□□□□ 0.87
CLIP3-206ENST00000593074 ZMYND8Q9ULU4 1186 aaPredicted RBP20.52■□□□□ 0.87
CLIP3-206ENST00000593074 TCRBV7S3A2A0A539 114 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 ADAMTS4O75173 837 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 BANF1O75531 89 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 CHRNA1P02708 482 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 RPLP2P05387 115 aaKnown RBP20.51■□□□□ 0.87
CLIP3-206ENST00000593074 TKTP29401 623 aaKnown RBP20.51■□□□□ 0.87
CLIP3-206ENST00000593074 GPX6P59796 221 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 MSS51Q4VC12 460 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 LRRC34Q8IZ02 419 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 B3GALNT2Q8NCR0 500 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 ADAM33Q9BZ11 813 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 USP29Q9HBJ7 922 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 FETUBQ9UGM5 382 aa20.51■□□□□ 0.87
CLIP3-206ENST00000593074 MYCNP04198 464 aaPredicted RBP20.5■□□□□ 0.87
CLIP3-206ENST00000593074 ASGR1P07306 291 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 CTSHP09668 335 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 IFT88Q13099 833 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 MPP2Q14168 576 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 DPYSL2Q16555 572 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 TRABD2AQ86V40 505 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 OSTM1Q86WC4 334 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 HACE1Q8IYU2 909 aa20.5■□□□□ 0.87
CLIP3-206ENST00000593074 ATP11CQ8NB49 1132 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms