RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 PRRX2Q99811 253 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 ARID3AQ99856 593 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 FOXQ1Q9C009 403 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 SMG9Q9H0W8 520 aaKnown RBP11.89□□□□□ -0.51
SMAD4-211ENST00000590499 FAM124BQ9H5Z6 455 aaPredicted RBP11.89□□□□□ -0.51
SMAD4-211ENST00000590499 BRD9Q9H8M2 597 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 CSNK1G1Q9HCP0 422 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 PGPEP1Q9NXJ5 209 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 GCNT4Q9P109 453 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 CCL26Q9Y258 94 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 MYO16Q9Y6X6 1858 aa11.89□□□□□ -0.51
SMAD4-211ENST00000590499 ATP8B3O60423 1300 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 KANSL1LA0AUZ9 987 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 CHADO15335 359 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 IGHA1P01876 353 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 CCDC130P13994 396 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 GLULP15104 373 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 PLA2G5P39877 138 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 FMO5P49326 533 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 TRIM59Q8IWR1 403 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 CCDC105Q8IYK2 499 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 CELF5Q8N6W0 485 aaKnown RBP11.88□□□□□ -0.51
SMAD4-211ENST00000590499 C12orf29Q8N999 325 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 CCDC150Q8NCX0 1101 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 PJA1Q8NG27 643 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 SLC2A14Q8TDB8 520 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 BPIFB1Q8TDL5 484 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 SHDQ96IW2 340 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 IPO9Q96P70 1041 aaKnown RBP11.88□□□□□ -0.51
SMAD4-211ENST00000590499 KCNK16Q96T55 309 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 HNRNPABQ99729 332 aaKnown RBP11.88□□□□□ -0.51
SMAD4-211ENST00000590499 SMOQ99835 787 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 NT5C1AQ9BXI3 368 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 KIF9Q9HAQ2 790 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 DMAP1Q9NPF5 467 aaPredicted RBP11.88□□□□□ -0.51
SMAD4-211ENST00000590499 HEBP1Q9NRV9 189 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 KRT82Q9NSB4 513 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 IL37Q9NZH6 218 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 EHD2Q9NZN4 543 aa11.88□□□□□ -0.51
SMAD4-211ENST00000590499 WDR87Q6ZQQ6 2873 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 FAM92AA1XBS5 289 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 C2orf78A6NCI8 922 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF840PA6NDX5 716 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF263O14978 683 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 BEST1O76090 585 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 OLFM2O95897 454 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 PFKLP17858 780 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 CD58P19256 250 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 AVPR1AP37288 418 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 MLLT6P55198 1093 aaPredicted RBP11.87□□□□□ -0.51
SMAD4-211ENST00000590499 NHLH1Q02575 133 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 USP4Q13107 963 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 CCDC40Q4G0X9 1142 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 ARHGAP29Q52LW3 1261 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 RNFT1Q5M7Z0 435 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 TPRG1Q6ZUI0 275 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 NUP93Q8N1F7 819 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 TTC39CQ8N584 583 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 UBR7Q8N806 425 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 LMO3Q8TAP4 145 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 ZFYVE19Q96K21 471 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 FAM83CQ9BQN1 747 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 MED10Q9BTT4 135 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 OSBPL6Q9BZF3 934 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 LTB4R2Q9NPC1 389 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 CISHQ9NSE2 258 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 FAM49BQ9NUQ9 324 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 TDP1Q9NUW8 608 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 RWDD2AQ9UIY3 292 aa11.87□□□□□ -0.51
SMAD4-211ENST00000590499 MTF2Q9Y483 593 aaPredicted RBP11.87□□□□□ -0.51
SMAD4-211ENST00000590499 TRAV19A0A0A6YYK7 116 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 HHLA1C9JL84 531 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 P4HA2O15460 535 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 RTN3O95197 1032 aaPredicted RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 GNA14O95837 355 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 OAS1P00973 400 aaKnown RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 ZDHHC11BP0C7U3 371 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 TCF3P15923 654 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 CD72P21854 359 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 TARSP26639 723 aaKnown RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 PPP3CCP48454 512 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 SLC5A3P53794 718 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 RAD23BP54727 409 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 DHX9Q08211 1270 aaKnown RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 TAF10Q12962 218 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 CBLBQ13191 982 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 FZD5Q13467 585 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 CUL2Q13617 745 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF77Q15935 545 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 WDR44Q5JSH3 913 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 CLEC20AQ6ZU45 233 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 YAF2Q8IY57 180 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 ARL14EPQ8N8R7 260 aaPredicted RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 MLKLQ8NB16 471 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 DTWD2Q8NBA8 298 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 SLC4A11Q8NBS3 891 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 SCAMP5Q8TAC9 235 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 GPT2Q8TD30 523 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 NANOS1Q8WY41 292 aaKnown RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 OVCA2Q8WZ82 227 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms