RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RBM12Q9NTZ6 932 aaKnown RBP11.1□□□□□ -0.63
LIG3-212ENST00000590181 KIAA1468Q9P260 1216 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 RALYQ9UKM9 306 aaKnown RBP11.1□□□□□ -0.63
LIG3-212ENST00000590181 SCML2Q9UQR0 700 aa11.1□□□□□ -0.63
LIG3-212ENST00000590181 ITPR1Q14643 2758 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 HRO43593 1189 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 TADA3O75528 432 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 TRIM49P0CI25 452 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 TRIM49CP0CI26 452 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 PMLP29590 882 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 SOX9P48436 509 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 SLC5A3P53794 718 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 CCINQ13939 588 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 TMEM196Q5HYL7 178 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 SDHAF4Q5VUM1 108 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 TCERG1LQ5VWI1 586 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 PAQR9Q6ZVX9 377 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 CAMKK1Q8N5S9 505 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 FAM160A2Q8N612 972 aaPredicted RBP11.09□□□□□ -0.63
LIG3-212ENST00000590181 ARL14EPQ8N8R7 260 aaPredicted RBP11.09□□□□□ -0.63
LIG3-212ENST00000590181 MLKLQ8NB16 471 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 SLC2A14Q8TDB8 520 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 SH3RF2Q8TEC5 729 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 SLC35C1Q96A29 364 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 TMEM176AQ96HP8 235 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 FAM84AQ96KN4 292 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 HEXIM2Q96MH2 286 aaKnown RBP11.09□□□□□ -0.63
LIG3-212ENST00000590181 CYP2S1Q96SQ9 504 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 DPEP3Q9H4B8 488 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 ECT2Q9H8V3 914 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 KRT82Q9NSB4 513 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 CISHQ9NSE2 258 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 GTSE1Q9NYZ3 720 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 CLIC5Q9NZA1 410 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 MAN1B1Q9UKM7 699 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 ZNF510Q9Y2H8 683 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 ASPMQ8IZT6 3477 aa11.09□□□□□ -0.63
LIG3-212ENST00000590181 PKD1L2Q7Z442 2459 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 A0A0A0MRY4 1105 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.08□□□□□ -0.64
LIG3-212ENST00000590181 PPP1R3GB7ZBB8 358 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 K7ESF4 209 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 LEFTY2O00292 366 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 HCRTO43612 131 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 ADH1CP00326 375 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 PAEPP09466 180 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 ATP5C1P36542 298 aaKnown RBP11.08□□□□□ -0.64
LIG3-212ENST00000590181 PAK1Q13153 545 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 SF3A2Q15428 464 aaKnown RBP11.08□□□□□ -0.64
LIG3-212ENST00000590181 EML3Q32P44 896 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 CCDC40Q4G0X9 1142 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 N4BP2L1Q5TBK1 243 aaPredicted RBP11.08□□□□□ -0.64
LIG3-212ENST00000590181 ARHGAP17Q68EM7 881 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 TTI2Q6NXR4 508 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 SCARA5Q6ZMJ2 495 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 CCDC186Q7Z3E2 898 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 SMYD4Q8IYR2 804 aaPredicted RBP11.08□□□□□ -0.64
LIG3-212ENST00000590181 ADGRG2Q8IZP9 1017 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 SCML4Q8N228 414 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 C12orf50Q8NA57 414 aaPredicted RBP11.08□□□□□ -0.64
LIG3-212ENST00000590181 ANKRD52Q8NB46 1076 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 KCNK16Q96T55 309 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 P2RY13Q9BPV8 354 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 SDCBP2Q9H190 292 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 CYLDQ9NQC7 956 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 HESX1Q9UBX0 185 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 DACH1Q9UI36 760 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 CCL26Q9Y258 94 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 NME7Q9Y5B8 376 aa11.08□□□□□ -0.64
LIG3-212ENST00000590181 DSPP15924 2871 aaKnown RBP11.07□□□□□ -0.64
LIG3-212ENST00000590181 NBEAQ8NFP9 2946 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 WDFY3Q8IZQ1 3526 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 C2orf78A6NCI8 922 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 CLDN5O00501 218 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 ABL1P00519 1130 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 RALAP11233 206 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 GJA4P35212 333 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 PLA2G4AP47712 749 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 FMO5P49326 533 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 KIF11P52732 1056 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 LIMK1P53667 647 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 MAP3K7CLP57077 242 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 USP46P62068 366 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 COG7P83436 770 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 GCNT1Q02742 428 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 CUL2Q13617 745 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 CCDC6Q16204 474 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 MEA1Q16626 185 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 SGO2Q562F6 1265 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 DCAF17Q5H9S7 520 aaPredicted RBP11.07□□□□□ -0.64
LIG3-212ENST00000590181 CLEC20AQ6ZU45 233 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 HTR3DQ70Z44 454 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 ENOSF1Q7L5Y1 443 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 WDR5BQ86VZ2 330 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 NELFBQ8WX92 580 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 CD101Q93033 1021 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 ACDQ96AP0 544 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 NT5C1BQ96P26 610 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 SMOQ99835 787 aa11.07□□□□□ -0.64
LIG3-212ENST00000590181 IRX2Q9BZI1 471 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms