RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 AMACRQ9UHK6 382 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 USP18Q9UMW8 372 aa11.01□□□□□ -0.65
SS18-217ENST00000580958 hCG_1818297A0A087WSY0 165 aa11□□□□□ -0.65
SS18-217ENST00000580958 ABHD14A-ACY1A0A1B0GW23 586 aa11□□□□□ -0.65
SS18-217ENST00000580958 ESYT3A0FGR9 886 aa11□□□□□ -0.65
SS18-217ENST00000580958 BHMG1C9JSJ3 638 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 TTI1O43156 1089 aa11□□□□□ -0.65
SS18-217ENST00000580958 PRPSAP2O60256 369 aa11□□□□□ -0.65
SS18-217ENST00000580958 HSF2BPO75031 334 aa11□□□□□ -0.65
SS18-217ENST00000580958 DGKIO75912 1065 aa11□□□□□ -0.65
SS18-217ENST00000580958 MYBL2P10244 700 aa11□□□□□ -0.65
SS18-217ENST00000580958 KRT10P13645 584 aa11□□□□□ -0.65
SS18-217ENST00000580958 CSF2RAP15509 400 aa11□□□□□ -0.65
SS18-217ENST00000580958 CAPN2P17655 700 aa11□□□□□ -0.65
SS18-217ENST00000580958 TFE3P19532 575 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 FGFR3P22607 806 aa11□□□□□ -0.65
SS18-217ENST00000580958 KDELR1P24390 212 aa11□□□□□ -0.65
SS18-217ENST00000580958 PTPN7P35236 360 aa11□□□□□ -0.65
SS18-217ENST00000580958 COILP38432 576 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 PTGIRP43119 386 aa11□□□□□ -0.65
SS18-217ENST00000580958 SULT1E1P49888 294 aa11□□□□□ -0.65
SS18-217ENST00000580958 DAOAP59103 153 aa11□□□□□ -0.65
SS18-217ENST00000580958 COPS2P61201 443 aa11□□□□□ -0.65
SS18-217ENST00000580958 DEFB103AP81534 67 aa11□□□□□ -0.65
SS18-217ENST00000580958 GUCY2DQ02846 1103 aa11□□□□□ -0.65
SS18-217ENST00000580958 KLF1Q13351 362 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 MRPL58Q14197 206 aaKnown RBP11□□□□□ -0.65
SS18-217ENST00000580958 KCTD19Q17RG1 926 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 CTXN3Q4LDR2 81 aa11□□□□□ -0.65
SS18-217ENST00000580958 RAB41Q5JT25 222 aa11□□□□□ -0.65
SS18-217ENST00000580958 KCNT1Q5JUK3 1230 aa11□□□□□ -0.65
SS18-217ENST00000580958 KAZNQ674X7 775 aa11□□□□□ -0.65
SS18-217ENST00000580958 ZNF280DQ6N043 979 aa11□□□□□ -0.65
SS18-217ENST00000580958 FAM117BQ6P1L5 589 aa11□□□□□ -0.65
SS18-217ENST00000580958 SCYL2Q6P3W7 929 aa11□□□□□ -0.65
SS18-217ENST00000580958 CCNI2Q6ZMN8 369 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 C4orf50Q6ZRC1 276 aa11□□□□□ -0.65
SS18-217ENST00000580958 HFE2Q6ZVN8 426 aa11□□□□□ -0.65
SS18-217ENST00000580958 CYP4V2Q6ZWL3 525 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 ARCQ7LC44 396 aa11□□□□□ -0.65
SS18-217ENST00000580958 TMEM173Q86WV6 379 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 IFT20Q8IY31 132 aa11□□□□□ -0.65
SS18-217ENST00000580958 BCL7CQ8WUZ0 217 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 C1orf54Q8WWF1 131 aa11□□□□□ -0.65
SS18-217ENST00000580958 HSPH1Q92598 858 aa11□□□□□ -0.65
SS18-217ENST00000580958 FAM149B1Q96BN6 582 aa11□□□□□ -0.65
SS18-217ENST00000580958 TRIM51Q9BSJ1 452 aa11□□□□□ -0.65
SS18-217ENST00000580958 DDX23Q9BUQ8 820 aaKnown RBP11□□□□□ -0.65
SS18-217ENST00000580958 ADAM33Q9BZ11 813 aa11□□□□□ -0.65
SS18-217ENST00000580958 DCLK3Q9C098 648 aa11□□□□□ -0.65
SS18-217ENST00000580958 CWH43Q9H720 699 aa11□□□□□ -0.65
SS18-217ENST00000580958 EPB41L5Q9HCM4 733 aa11□□□□□ -0.65
SS18-217ENST00000580958 CSNK1G1Q9HCP0 422 aa11□□□□□ -0.65
SS18-217ENST00000580958 DMAP1Q9NPF5 467 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 GPATCH2LQ9NWQ4 482 aa11□□□□□ -0.65
SS18-217ENST00000580958 ZNF446Q9NWS9 450 aa11□□□□□ -0.65
SS18-217ENST00000580958 R3HDM2Q9Y2K5 976 aaKnown RBP11□□□□□ -0.65
SS18-217ENST00000580958 COL4A4P53420 1690 aaPredicted RBP11□□□□□ -0.65
SS18-217ENST00000580958 SF3B1O75533 1304 aaKnown RBP eCLIP11□□□□□ -0.65
SS18-217ENST00000580958 FAM187AA6NFU0 413 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 C3orf70A6NLC5 250 aaPredicted RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 AMHP03971 560 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CD48P09326 243 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 USP17L7P0C7H9 530 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 ACRP10323 421 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 DESP17661 470 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CYP2F1P24903 491 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 TNFRSF8P28908 595 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 MATKP42679 507 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CDKN2BP42772 138 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 KCNJ1P48048 391 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 HDAC4P56524 1084 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 DR1Q01658 176 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 ADCY2Q08462 1091 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 ELAVL2Q12926 359 aaKnown RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 SNX1Q13596 522 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 DHX34Q14147 1143 aaKnown RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 BEND6Q5SZJ8 279 aaPredicted RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 MFSD5Q6N075 450 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CCDC137Q6PK04 289 aaKnown RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 MAATS1Q7Z4T9 603 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 TMCO2Q7Z6W1 182 aaPredicted RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 ZNF687Q8N1G0 1237 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 TMEM199Q8N511 208 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 HNRNPLLQ8WVV9 542 aaKnown RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 ATG4AQ8WYN0 398 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CENPIQ92674 756 aaPredicted RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 TOP1MTQ969P6 601 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 SLC2A13Q96QE2 648 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 TBCBQ99426 244 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 NCAPGQ9BPX3 1015 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 C11orf84Q9BUA3 381 aaPredicted RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 LRRC19Q9H756 370 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 ARFGAP3Q9NP61 516 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CNGB3Q9NQW8 809 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 CHST7Q9NS84 486 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 ABI2Q9NYB9 513 aaPredicted RBP10.99□□□□□ -0.65
SS18-217ENST00000580958 PCYOX1Q9UHG3 505 aa10.99□□□□□ -0.65
SS18-217ENST00000580958 OR6C75A6NL08 312 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 YJEFN3A6XGL0 299 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms