RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 DPYSL4O14531 572 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ZMYND10O75800 440 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 LTFP02788 710 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 POU2F2P09086 479 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 HNRNPA1P09651 372 aaKnown RBP eCLIP11.25□□□□□ -0.61
SS18-213ENST00000579640 SPATA31D3P0C874 917 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 GPD1P21695 349 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 MAN1A1P33908 653 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 RFC1P35251 1148 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 SLC1A1P43005 524 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 PPP3CCP48454 512 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 RPL7AP62424 266 aaKnown RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 IFRD2Q12894 506 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 PIGHQ14442 188 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 ACAP1Q15027 740 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 PPM1LQ5SGD2 360 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 SPATA31D4Q6ZUB0 917 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 NYAP1Q6ZVC0 841 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 JOSD2Q8TAC2 188 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 KHSRPQ92945 711 aaKnown RBP eCLIP11.25□□□□□ -0.613e-7■■■■□ 20.1
SS18-213ENST00000579640 FBXO32Q969P5 355 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 PSMG2Q969U7 264 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 PIWIL1Q96J94 861 aaKnown RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 SLITRK1Q96PX8 696 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 SLC2A13Q96QE2 648 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 NCAPGQ9BPX3 1015 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 NSUN3Q9H649 340 aaKnown RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 MAN1C1Q9NR34 630 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 RRN3Q9NYV6 651 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.25□□□□□ -0.61
SS18-213ENST00000579640 CAPN6Q9Y6Q1 641 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ATG2AQ2TAZ0 1938 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 MYO16Q9Y6X6 1858 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 GRID2IPA4D2P6 1211 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 C2CD4BA6NLJ0 364 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 YJEFN3A6XGL0 299 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 E7ENQ6 273 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 BUB1BO60566 1050 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 PROSCO94903 275 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 GJB6O95452 261 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 SDC4P31431 198 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 NOS2P35228 1153 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 MATKP42679 507 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ZNF143P52747 638 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 RNASE9P60153 205 aaKnown RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 GNG11P61952 73 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 YWHAGP61981 247 aaKnown RBP eCLIP11.25□□□□□ -0.61
SS18-213ENST00000579640 USP46P62068 366 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 TAF5Q15542 800 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ZNF569Q5MCW4 686 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 BHLHA9Q7RTU4 235 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 DNAJB7Q7Z6W7 309 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 SLFN11Q7Z7L1 901 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ADGRD2Q7Z7M1 963 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 DAAM2Q86T65 1068 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 NIPA2Q8N8Q9 360 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 LRRC57Q8N9N7 239 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 GPR152Q8TDT2 470 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 RXFP2Q8WXD0 754 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ZNF512Q96ME7 567 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 CNPY3Q9BT09 278 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 IRX2Q9BZI1 471 aaPredicted RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 TLR8Q9NR97 1041 aaKnown RBP11.25□□□□□ -0.61
SS18-213ENST00000579640 ABCC13Q9NSE7 274 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 TMEM51Q9NW97 253 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 ZDHHC7Q9NXF8 308 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 CLIC5Q9NZA1 410 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 STAP1Q9ULZ2 295 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 HCFC2Q9Y5Z7 792 aa11.25□□□□□ -0.61
SS18-213ENST00000579640 RFXAPO00287 272 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 CAPN9O14815 690 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 PER2O15055 1255 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 PALMO75781 387 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 GRAP2O75791 330 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 PDGFRAP16234 1089 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 EPCAMP16422 314 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 HMGA1P17096 107 aaKnown RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 PSMA2P25787 234 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 FLT3P36888 993 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 PTPN9P43378 593 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 NRIP1P48552 1158 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 ETF1P62495 437 aaKnown RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 TAF10Q12962 218 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 MTMR3Q13615 1198 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 MESDQ14696 234 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 BSPRYQ5W0U4 402 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 BTBD8Q5XKL5 378 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 RBM23Q86U06 439 aaKnown RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 DEFB106AQ8N104 65 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 EMC1Q8N766 993 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 NDRG1Q92597 394 aaKnown RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 CASP10Q92851 521 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 DDX23Q9BUQ8 820 aaKnown RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 DZANK1Q9NVP4 752 aa11.24□□□□□ -0.61
SS18-213ENST00000579640 MAGED2Q9UNF1 606 aaPredicted RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 ZNF638Q14966 1978 aaKnown RBP11.24□□□□□ -0.61
SS18-213ENST00000579640 XYLBO75191 536 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 ZDHHC11BP0C7U3 371 aa11.23□□□□□ -0.61
SS18-213ENST00000579640 SRGAP2BP0DMP2 458 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms