RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GIPC1O14908 333 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 KLRC4O43908 158 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 AP1G2O75843 785 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 IRX4P78413 519 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 FOXD4L5Q5VV16 416 aaPredicted RBP22.32■■□□□ 1.16
VPS53-216ENST00000574029 SCARA5Q6ZMJ2 495 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 LPCAT2Q7L5N7 544 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 ACOT1Q86TX2 421 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 SLC9A9Q8IVB4 645 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 BBS7Q8IWZ6 715 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 ZMIZ2Q8NF64 920 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 FOXD4L4Q8WXT5 416 aaPredicted RBP22.32■■□□□ 1.16
VPS53-216ENST00000574029 PIGKQ92643 395 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 WBP2Q969T9 261 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 SPACA7Q96KW9 195 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 CSNK1G1Q9HCP0 422 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 ZDHHC4Q9NPG8 344 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 SPHK2Q9NRA0 654 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 KRT82Q9NSB4 513 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 MBD1Q9UIS9 605 aaPredicted RBP22.32■■□□□ 1.16
VPS53-216ENST00000574029 LAMA1P25391 3075 aa22.32■■□□□ 1.16
VPS53-216ENST00000574029 CHD8Q9HCK8 2581 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 TULP3O75386 442 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 PDIA4P13667 645 aaKnown RBP22.31■■□□□ 1.16
VPS53-216ENST00000574029 ME1P48163 572 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 STK4Q13043 487 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 MAP7D1Q3KQU3 841 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 FOXD4L6Q3SYB3 417 aaPredicted RBP22.31■■□□□ 1.16
VPS53-216ENST00000574029 PREPLQ4J6C6 727 aaPredicted RBP22.31■■□□□ 1.16
VPS53-216ENST00000574029 SPDYCQ5MJ68 293 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 BTBD8Q5XKL5 378 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 FOXD4L3Q6VB84 417 aaPredicted RBP22.31■■□□□ 1.16
VPS53-216ENST00000574029 GRAMD1CQ8IYS0 662 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 CRYBG2Q8N1P7 616 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 FRMD1Q8N878 549 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 NAT16Q8N8M0 369 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 KIAA0895Q8NCT3 520 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 HMGB4Q8WW32 186 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 SMOQ99835 787 aa22.31■■□□□ 1.16
VPS53-216ENST00000574029 BCCIPQ9P287 314 aaKnown RBP eCLIP22.31■■□□□ 1.16
VPS53-216ENST00000574029 TCRBV21S2A2A0A5A6 115 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 TBC1D3BA6NDS4 549 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 MAP3K13O43283 966 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 BEST1O76090 585 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 CLSTN1O94985 981 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 F13A1P00488 732 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 ZSCAN22P10073 491 aaPredicted RBP22.3■■□□□ 1.16
VPS53-216ENST00000574029 CCDC130P13994 396 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 CSRP1P21291 193 aaKnown RBP22.3■■□□□ 1.16
VPS53-216ENST00000574029 PGFP49763 221 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 DLG4P78352 724 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 BYSLQ13895 437 aaKnown RBP22.3■■□□□ 1.16
VPS53-216ENST00000574029 SGSM1Q2NKQ1 1148 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 ZACNQ401N2 412 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 SH3PXD2AQ5TCZ1 1133 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 ATL3Q6DD88 541 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 TMEM25Q86YD3 366 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 SNX21Q969T3 373 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 KCTD10Q9H3F6 313 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 DEC1Q9P2X7 70 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 SERTAD1Q9UHV2 236 aa22.3■■□□□ 1.16
VPS53-216ENST00000574029 CIZ1Q9ULV3 898 aaPredicted RBP22.3■■□□□ 1.16
VPS53-216ENST00000574029 MYH10P35580 1976 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 RPN1P04843 607 aaKnown RBP22.29■■□□□ 1.16
VPS53-216ENST00000574029 SLFN14P0C7P3 912 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 P4HA1P13674 534 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 CEACAM1P13688 526 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 PTGER3P43115 390 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 NDST1P52848 882 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 LMAN2Q12907 356 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 ANO4Q32M45 955 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 HTR3DQ70Z44 454 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 TRMT11Q7Z4G4 463 aaKnown RBP22.29■■□□□ 1.16
VPS53-216ENST00000574029 UNC93AQ86WB7 457 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 SYT12Q8IV01 421 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 TMEFF1Q8IYR6 380 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 CEP57L1Q8IYX8 460 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 ZNF513Q8N8E2 541 aaPredicted RBP22.29■■□□□ 1.16
VPS53-216ENST00000574029 TERB1Q8NA31 727 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 SLC2A14Q8TDB8 520 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 TAF4BQ92750 862 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 NACA2Q9H009 215 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 FBXO44Q9H4M3 255 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 TMEM74BQ9NUR3 256 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 HMGXB4Q9UGU5 601 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 HCN2Q9UL51 889 aa22.29■■□□□ 1.16
VPS53-216ENST00000574029 CEP192Q8TEP8 1941 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 ACTN4O43707 911 aaKnown RBP22.28■■□□□ 1.16
VPS53-216ENST00000574029 GREM1O60565 184 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 TLR5O60602 858 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 IRF1P10914 325 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 MAP3K7CLP57077 242 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 ZNF252P-AS1Q0IIN9 211 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 ORC1Q13415 861 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 TRIM61Q5EBN2 209 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 C10orf76Q5T2E6 689 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 NUDT18Q6ZVK8 323 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 ARMCX6Q7L4S7 300 aa22.28■■□□□ 1.16
VPS53-216ENST00000574029 PGBD3Q8N328 593 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms