RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 KRT81Q14533 505 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 KYAT1Q16773 422 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 BOLA3Q53S33 107 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 TAF1BQ53T94 588 aaPredicted RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 GJC2Q5T442 439 aaPredicted RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 PRPF39Q86UA1 669 aaKnown RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 MAP7D3Q8IWC1 876 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 NSMCE1Q8WV22 266 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 SGIP1Q9BQI5 828 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 CXorf56Q9H5V9 222 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 RAB6BQ9NRW1 208 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 GPATCH2LQ9NWQ4 482 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 AKT3Q9Y243 479 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 TRAFD1O14545 582 aaPredicted RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 CBX6O95503 412 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 RGS7P49802 495 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 OVGP1Q12889 678 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 CTC1Q2NKJ3 1217 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 MTDHQ86UE4 582 aaKnown RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 N4BP2L2Q92802 583 aaPredicted RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 APOPT1Q96IL0 206 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 ALG13Q9NP73 1137 aaKnown RBP23.72■■□□□ 1.39
VPS53-211ENST00000571805 KCNH4Q9UQ05 1017 aa23.72■■□□□ 1.39
VPS53-211ENST00000571805 KCNN4O15554 427 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 TROVE2P10155 538 aaKnown RBP eCLIP23.71■■□□□ 1.39
VPS53-211ENST00000571805 YWHAZP63104 245 aaKnown RBP23.71■■□□□ 1.39
VPS53-211ENST00000571805 GOLGA7BQ2TAP0 167 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 PKDCCQ504Y2 493 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 PMF1Q6P1K2 205 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 OLFML1Q6UWY5 402 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 CHSY1Q86X52 802 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 TTC39CQ8N584 583 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 PCDH19Q8TAB3 1148 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 USP6NLQ92738 828 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 ACAP3Q96P50 834 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 TBC1D10AQ9BXI6 508 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 PCDH18Q9HCL0 1135 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 IKBKGQ9Y6K9 419 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 CITO14578 2027 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 SPDYE5A6NIY4 337 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 INHBAP08476 426 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 RBL1P28749 1068 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 PPP1R26Q5T8A7 1209 aaPredicted RBP23.71■■□□□ 1.39
VPS53-211ENST00000571805 SLC9A4Q6AI14 798 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 ZNF449Q6P9G9 518 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 TEKT4Q8WW24 435 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 MROH8Q9H579 483 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 ZFP69BQ9UJL9 534 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 DCTN4Q9UJW0 460 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 TTLL3Q9Y4R7 772 aa23.71■■□□□ 1.39
VPS53-211ENST00000571805 DICER1Q9UPY3 1922 aaKnown RBP23.71■■□□□ 1.39
VPS53-211ENST00000571805 PLXNA1Q9UIW2 1896 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 TSPAN1O60635 241 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 RPSAP08865 295 aaKnown RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 PYGBP11216 843 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 TGM2P21980 687 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 GCLCP48506 637 aaPredicted RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 CA9Q16790 459 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 SCYL2Q6P3W7 929 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 MOB2Q70IA6 237 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 CLNKQ7Z7G1 428 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 CAND1Q86VP6 1230 aaKnown RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 LRRC6Q86X45 466 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 SULF1Q8IWU6 871 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 NLGN2Q8NFZ4 835 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 DCPSQ96C86 337 aaKnown RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 PLAC1Q9HBJ0 212 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 LOC102724159A0A0B4J2E5 919 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 BCLAF3A2AJT9 711 aaKnown RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 BCAR1P56945 870 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 PWP2Q15269 919 aaKnown RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 TTC30AQ86WT1 665 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 FAM172AQ8WUF8 416 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 FAM111AQ96PZ2 611 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 SLC4A5Q9BY07 1137 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 FRMD8Q9BZ67 464 aaPredicted RBP23.7■■□□□ 1.38
VPS53-211ENST00000571805 SAR1AQ9NR31 198 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 CNTN3Q9P232 1028 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 HEY1Q9Y5J3 304 aa23.7■■□□□ 1.38
VPS53-211ENST00000571805 CFAP69A5D8W1 941 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 APOL1O14791 398 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 GABBR2O75899 941 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 MAGEA6P43360 314 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 LAMC2Q13753 1193 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 PRKD1Q15139 912 aaPredicted RBP23.69■■□□□ 1.38
VPS53-211ENST00000571805 STILQ15468 1287 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 MAMDC4Q6UXC1 1216 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 ARMCX2Q7L311 632 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 SLC26A11Q86WA9 606 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 TSSK1BQ9BXA7 367 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 POPDC2Q9HBU9 364 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 NGRNQ9NPE2 291 aaKnown RBP23.69■■□□□ 1.38
VPS53-211ENST00000571805 ASB14A6NK59 587 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 FAM155BO75949 473 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 RASSF2P50749 326 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 SLC6A3Q01959 620 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 TAPT1Q6NXT6 567 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 TMEM110Q86TL2 294 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 LONP2Q86WA8 852 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms