RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MRPS5P82675 430 aaKnown RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 DR1Q01658 176 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 CAV1Q03135 178 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 TFDP3Q5H9I0 405 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 MDH1BQ5I0G3 518 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 CLLU1OSQ5K130 101 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 SPDYCQ5MJ68 293 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 CYP4A22Q5TCH4 519 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 PMF1Q6P1K2 205 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 OLFML1Q6UWY5 402 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 FAM183BPQ6ZVS7 135 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 ANKS3Q6ZW76 656 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 PIGZQ86VD9 579 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 SPATA2LQ8IUW3 424 aaPredicted RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 CCDC50Q8IVM0 306 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 GPR65Q8IYL9 337 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 GOLGA6L1Q8N7Z2 621 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 KCTD6Q8NC69 237 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 CMASQ8NFW8 434 aaPredicted RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 RXFP2Q8WXD0 754 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 ALG3Q92685 438 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 KRT35Q92764 455 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 BTBD6Q96KE9 485 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 FERMT1Q9BQL6 677 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 DDX23Q9BUQ8 820 aaKnown RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 CXCL16Q9H2A7 254 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 GOLPH3Q9H4A6 298 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 VIPAS39Q9H9C1 493 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 POPDC2Q9HBU9 364 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 DMAP1Q9NPF5 467 aaPredicted RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 GDF3Q9NR23 364 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 FAM49BQ9NUQ9 324 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 RCOR3Q9P2K3 495 aaPredicted RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 CYTH4Q9UIA0 394 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 ADAM28Q9UKQ2 775 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 TBX21Q9UL17 535 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 MAFFQ9ULX9 164 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 USP18Q9UMW8 372 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 DRG1Q9Y295 367 aaKnown RBP8.34□□□□□ -1.07
VPS39-213ENST00000570062 SSX2IPQ9Y2D8 614 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 RALGAPA2Q2PPJ7 1873 aa8.34□□□□□ -1.07
VPS39-213ENST00000570062 MEIS3P2A8K0S8 358 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 F8VP50 259 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 NRP1O14786 923 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CAPN9O14815 690 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 KIAA0355O15063 1070 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 PAPSS1O43252 624 aaPredicted RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 LRCH4O75427 683 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 HEXIM1O94992 359 aaKnown RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 ECEL1O95672 775 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 KRT1P04264 644 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CYP2C18P33260 490 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 COILP38432 576 aaPredicted RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 MAGEA11P43364 429 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CREMQ03060 361 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 ORC1Q13415 861 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 MRPL58Q14197 206 aaKnown RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 ARL13BQ3SXY8 428 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 SLC25A52Q3SY17 297 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 TRIM60Q495X7 471 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 RAB41Q5JT25 222 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 ZNF280DQ6N043 979 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 FBXO38Q6PIJ6 1188 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CCDC137Q6PK04 289 aaKnown RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 C4orf22Q6V702 233 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 SPOCD1Q6ZMY3 1216 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CLEC20AQ6ZU45 233 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 SND1Q7KZF4 910 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS39-213ENST00000570062 FAM35AQ86V20 835 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 OSTM1Q86WC4 334 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 KLHL7Q8IXQ5 586 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CCDC105Q8IYK2 499 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CCDC89Q8N998 374 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 SPPL2BQ8TCT7 592 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 LINC01599Q8WXQ3 324 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 SEC14L1Q92503 715 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CENPIQ92674 756 aaPredicted RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 LRRC45Q96CN5 670 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 HAUS1Q96CS2 278 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 PGAP3Q96FM1 320 aaPredicted RBP8.33□□□□□ -1.08
VPS39-213ENST00000570062 PCED1BQ96HM7 432 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 CASD1Q96PB1 797 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 ERP44Q9BS26 406 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 AP1M1Q9BXS5 423 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 B3GNT5Q9BYG0 378 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 FOXP3Q9BZS1 431 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 ZCWPW1Q9H0M4 648 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 DPEP3Q9H4B8 488 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 FBXO44Q9H4M3 255 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 DONSONQ9NYP3 566 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 HSFX1Q9UBD0 423 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 PRKAG2Q9UGJ0 569 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 ATP11BQ9Y2G3 1177 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 PCDHB5Q9Y5E4 795 aa8.33□□□□□ -1.08
VPS39-213ENST00000570062 MYBPHLA2RUH7 354 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 LRRD1A4D1F6 860 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 DAB1O75553 588 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 DDHD2O94830 711 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 ENDOD1O94919 500 aa8.32□□□□□ -1.08
VPS39-213ENST00000570062 TRUB2O95900 331 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms