RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ADAMTS19Q8TE59 1207 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 WBP2Q969T9 261 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 ZNF512Q96ME7 567 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 LRRC3BQ96PB8 259 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 SLC46A2Q9BY10 475 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 PACSIN1Q9BY11 444 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 CNGB3Q9NQW8 809 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS35-211ENST00000569950 CALCOCO1Q9P1Z2 691 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 CHORDC1Q9UHD1 332 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 NAGPAQ9UK23 515 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 TMEM59LQ9UK28 342 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 MAGED2Q9UNF1 606 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 BZW2Q9Y6E2 419 aaKnown RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 MYOFQ9NZM1 2061 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 SOWAHDA6NJG2 315 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 GREM1O60565 184 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 GJB6O95452 261 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 PRAMEF12O95522 483 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 SRGAP2BP0DMP2 458 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 MYL4P12829 197 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 LCP1P13796 627 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 MRPS5P82675 430 aaKnown RBP9.76□□□□□ -0.85
VPS35-211ENST00000569950 CCZ1BP86790 482 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 CCZ1P86791 482 aaPredicted RBP9.76□□□□□ -0.85
VPS35-211ENST00000569950 GFPT1Q06210 699 aaPredicted RBP9.76□□□□□ -0.85
VPS35-211ENST00000569950 IFRD2Q12894 506 aaPredicted RBP9.76□□□□□ -0.85
VPS35-211ENST00000569950 VEPH1Q14D04 833 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 SLC18A3Q16572 532 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 TDRD12Q587J7 1177 aaKnown RBP9.76□□□□□ -0.85
VPS35-211ENST00000569950 ARTNQ5T4W7 220 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 TXNDC8Q6A555 127 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 EP400NLQ6ZTU2 488 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 BNIPLQ7Z465 357 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 FMNL3Q8IVF7 1028 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 PIP4P2Q8N4L2 257 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 ZNF276Q8N554 614 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 ING5Q8WYH8 240 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 OVCA2Q8WZ82 227 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 FGF13Q92913 245 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 FBXO32Q969P5 355 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 C11orf70Q9BRQ4 267 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 DNAI2Q9GZS0 605 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 RNF38Q9H0F5 515 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 KCNF1Q9H3M0 494 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 CCSER2Q9H7U1 834 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 NHEJ1Q9H9Q4 299 aaPredicted RBP9.76□□□□□ -0.85
VPS35-211ENST00000569950 ASAH2Q9NR71 780 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 SPTLC3Q9NUV7 552 aa9.76□□□□□ -0.85
VPS35-211ENST00000569950 CUL9Q8IWT3 2517 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 A0A0U1RQJ8 604 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 RCCD1A6NED2 376 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ATMINO43313 823 aaPredicted RBP9.75□□□□□ -0.85
VPS35-211ENST00000569950 COCHO43405 550 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 TBX18O95935 607 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 IGLV3-25P01717 112 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 CCDC172P0C7W6 258 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 BMP1P13497 986 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 TFE3P19532 575 aaPredicted RBP9.75□□□□□ -0.85
VPS35-211ENST00000569950 TNFAIP3P21580 790 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 RRM1P23921 792 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 FSHRP23945 695 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 FLT3P36888 993 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 SCNN1AP37088 669 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 MTHFRP42898 656 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 OGDHQ02218 1023 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ZNF252P-AS1Q0IIN9 211 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 SKIV2LQ15477 1246 aaKnown RBP9.75□□□□□ -0.85
VPS35-211ENST00000569950 RAB6CQ53S08 254 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ATAT1Q5SQI0 421 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 SYPL2Q5VXT5 272 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 PLEKHA7Q6IQ23 1121 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 PTCRAQ6ISU1 281 aaPredicted RBP9.75□□□□□ -0.85
VPS35-211ENST00000569950 ELMSAN1Q6PJG2 1045 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 PDZD4Q76G19 769 aaPredicted RBP9.75□□□□□ -0.85
VPS35-211ENST00000569950 SLC26A9Q7LBE3 791 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 MON1AQ86VX9 555 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ERICH1Q86X53 443 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 LEMD2Q8NC56 503 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 JOSD2Q8TAC2 188 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ATRIPQ8WXE1 791 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 IRGQQ8WZA9 623 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 NT5C3BQ969T7 300 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 C18orf8Q96DM3 657 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ARHGEF26Q96DR7 871 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 SLC2A13Q96QE2 648 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 PPP1R9BQ96SB3 815 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 CYP2S1Q96SQ9 504 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 TRIM7Q9C029 511 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 MIS12Q9H081 205 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 RAB6CQ9H0N0 254 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 FBXO44Q9H4M3 255 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 LRRC4Q9HBW1 653 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 ST7Q9NRC1 585 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 CLIC5Q9NZA1 410 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 NUDT5Q9UKK9 219 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 CCL26Q9Y258 94 aa9.75□□□□□ -0.85
VPS35-211ENST00000569950 MRPS23Q9Y3D9 190 aaKnown RBP9.75□□□□□ -0.85
VPS35-211ENST00000569950 F5P12259 2224 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 C19orf67A6NJJ6 358 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms