RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CYP26A1O43174 497 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 TLR5O60602 858 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 EGFP01133 1207 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 KCNH2Q12809 1159 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 LRMPQ12912 555 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 NAIF1Q69YI7 327 aaPredicted RBP21.4■■□□□ 1.02
CLK3-225ENST00000569063 CCDC186Q7Z3E2 898 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 CD101Q93033 1021 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 NT5C1BQ96P26 610 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 OSER1Q9NX31 292 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 KIAA1257Q9ULG3 409 aa21.4■■□□□ 1.02
CLK3-225ENST00000569063 CCDC192P0DO97 292 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 GAB4Q2WGN9 574 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 FBXO43Q4G163 708 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 KLHDC10Q6PID8 442 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 ZNF276Q8N554 614 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 SUMF1Q8NBK3 374 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 OTUB2Q96DC9 234 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 NACA2Q9H009 215 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 CLSTN2Q9H4D0 955 aa21.39■■□□□ 1.01
CLK3-225ENST00000569063 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.39■■□□□ 1.01
CLK3-225ENST00000569063 ZFHX2Q9C0A1 2572 aaPredicted RBP21.38■■□□□ 1.01
CLK3-225ENST00000569063 K7ESF4 209 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 ATG13O75143 517 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 AFPP02771 609 aaKnown RBP21.38■■□□□ 1.01
CLK3-225ENST00000569063 CYP17A1P05093 508 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 HOXA6P31267 233 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 ATP5C1P36542 298 aaKnown RBP21.38■■□□□ 1.01
CLK3-225ENST00000569063 PSEN1P49768 467 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 SLC8A3P57103 927 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 DHCR24Q15392 516 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 SGO2Q562F6 1265 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 RAB41Q5JT25 222 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 PIGZQ86VD9 579 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 MLKLQ8NB16 471 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 EHBP1Q8NDI1 1231 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 KLF16Q9BXK1 252 aaPredicted RBP21.38■■□□□ 1.01
CLK3-225ENST00000569063 NMUR1Q9HB89 426 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLK3-225ENST00000569063 C2orf42Q9NWW7 574 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 SH3BP1Q9Y3L3 701 aa21.38■■□□□ 1.01
CLK3-225ENST00000569063 A0A1W2PQH9 124 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 CHURC1-FNTBB4DL54 471 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 TBX18O95935 607 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 VDRP11473 427 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 OPRD1P41143 372 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 RHBDF2Q6PJF5 856 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 SCD5Q86SK9 330 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 TTC30AQ86WT1 665 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 PPM1KQ8N3J5 372 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 EZH1Q92800 747 aaPredicted RBP21.37■■□□□ 1.01
CLK3-225ENST00000569063 MED15Q96RN5 788 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 EPC1Q9H2F5 836 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 CLIC5Q9NZA1 410 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 TSPAN16Q9UKR8 245 aa21.37■■□□□ 1.01
CLK3-225ENST00000569063 SCAMP3O14828 347 aaKnown RBP21.36■■□□□ 1.01
CLK3-225ENST00000569063 RNF40O75150 1001 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 ADH1CP00326 375 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 PAEPP09466 180 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 RARGP13631 454 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 BCAT1P54687 386 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 GCNT1Q02742 428 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 GOLGA7BQ2TAP0 167 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 PKN3Q6P5Z2 889 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 HTR3DQ70Z44 454 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 TADA2BQ86TJ2 420 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 NAGPAQ9UK23 515 aa21.36■■□□□ 1.01
CLK3-225ENST00000569063 MYO16Q9Y6X6 1858 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 O00370 1275 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 XPO1O14980 1071 aaKnown RBP21.35■■□□□ 1.01
CLK3-225ENST00000569063 GREM1O60565 184 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 CD19P15391 556 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 EIF2DP41214 584 aaKnown RBP21.35■■□□□ 1.01
CLK3-225ENST00000569063 PDE4CQ08493 712 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 TMEM270Q6UE05 265 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 BBS7Q8IWZ6 715 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 CCDC26Q8TAB7 109 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 WBP2Q969T9 261 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 CDK5RAP1Q96SZ6 601 aaKnown RBP21.35■■□□□ 1.01
CLK3-225ENST00000569063 HESX1Q9UBX0 185 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 DNMT3LQ9UJW3 386 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 PCDHB4Q9Y5E5 795 aa21.35■■□□□ 1.01
CLK3-225ENST00000569063 RNF225M0QZC1 329 aaPredicted RBP21.34■■□□□ 1.01
CLK3-225ENST00000569063 RALAP11233 206 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 PLA2G4AP47712 749 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 GOLGA8FQ08AF8 430 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 DMWDQ09019 674 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 GOLGA8DPQ0D2H9 430 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 BST2Q10589 180 aaKnown RBP21.34■■□□□ 1.01
CLK3-225ENST00000569063 C10orf120Q5SQS8 335 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 LY6G5CQ5SRR4 150 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 PM20D1Q6GTS8 502 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 LCLAT1Q6UWP7 414 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 RRAGAQ7L523 313 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 LONP2Q86WA8 852 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 ARHGEF19Q8IW93 802 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 ARHGAP18Q8N392 663 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 TFAP2BQ92481 460 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 KAT5Q92993 513 aa21.34■■□□□ 1.01
CLK3-225ENST00000569063 LMBRD1Q9NUN5 540 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms